Query= MSMg01no525_n06.b1 MSMg01no525_n06.b1 CHROMAT_FILE:
MSMg01no525_n06.b1 PHD_FILE: MSMg01no525_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:34 2005
(619 letters)
>mm_chr3_71762808_71763826
Length = 1019
Score = 1172 bits (606), Expect = 0.0
Identities = 612/614 (99%)
Strand = Plus / Minus
Query: 6 ggaattctttgttccctgttggtctcagctttttttattttaaaaagacattttctcttc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggaattctttgttccctgttggtctcagctttttttattttaaaaagacattttctcttc 676
Query: 66 gtttagtaaatgagaaatagcatgcattgagtgagaatgtgtatccagcttggcttttgc 125
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 gtttagtaaatgagaaatagcatgcattgagtgagaatgtgtatctagcttggcttttgc 616
Query: 126 cattaaagtaatgtattattttatcacatttatcagaatttgaagtggatcatacactga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cattaaagtaatgtattattttatcacatttatcagaatttgaagtggatcatacactga 556
Query: 186 tcatgtaccttattaaaaacctgattaatgatagaatttaatgtagcatgatcttttata 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcatgtaccttattaaaaacctgattaatgatagaatttaatgtagcatgatcttttata 496
Query: 246 ataggatttgtgataacatttgtattgatattttaaatgaaaaattggtgtatcaaagca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ataggatttgtgataacatttgtattgatattttaaatgaaaaattggtgtatcaaagca 436
Query: 306 atcaactaatggaacagagttctcttgaaggttcagagataaagtcattaaaaatagatt 365
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 atcaactaatggaacagagttctcttgaaggttcagagctaaagtcattaaaaatagatt 376
Query: 366 atgtgttattaataaatatttgaaaagtgaatgttttcaatgaaattttaacataattaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgtgttattaataaatatttgaaaagtgaatgttttcaatgaaattttaacataattaa 316
Query: 426 aggtagaaattcaatttcatatttgatatcacacaaaatgaattattacatgttatacct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aggtagaaattcaatttcatatttgatatcacacaaaatgaattattacatgttatacct 256
Query: 486 gtacttataaaatgaagagtatgtgtatagatttttgtattatgaaatagaataaaatat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtacttataaaatgaagagtatgtgtatagatttttgtattatgaaatagaataaaatat 196
Query: 546 ttattttacaaaatatatattaacatgaatatgtcactttaaatatgaacgtccaaatat 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttattttacaaaatatatattaacatgaatatgtcactttaaatatgaacgtccaaatat 136
Query: 606 actggagaaacagg 619
||||||||||||||
Sbjct: 135 actggagaaacagg 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_n06.g1 MSMg01no525_n06.g1 CHROMAT_FILE:
MSMg01no525_n06.g1 PHD_FILE: MSMg01no525_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:34 2005
(645 letters)
>mm_chr3_71584308_71585349
Length = 1042
Score = 1147 bits (593), Expect = 0.0
Identities = 636/665 (95%), Gaps = 25/665 (3%)
Strand = Plus / Plus
Query: 1 ccacattaattcccaaagctgctggactgatttaaattctttgtattttactgtacatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccacattaattcccaaagctgctggactgatttaaattctttgtattttactgtacatca 240
Query: 61 attaccaaaaaataagtgtttgatctatttacaatagttttaaaaagtcatgtataagtg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaccataaaataagtgtttgatctatttacaatagttttaaaaagtcatgtataagtg 300
Query: 121 ggtcagaaatgtcatacagcctttagatgaacaaatatcttacatatagaaaagaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtcagaaatgtcatacagcctttagatgaacaaatatcttacatatagaaaagaagaat 360
Query: 181 gttgcactatatgtgagagataaaaatgtatgcatagatcttcgtgtgtgtgtgtgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttgcactatatgtgagagataaaaatgtatgcatagatcttcgtgtgtgtgtgtgtgtg 420
Query: 241 t--------------------ttaaaaaaagtggtagggaatgaagaaagaaagagatga 280
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtgtgtgtgtgtgtgtgtgtttaaaaaaagtggtagggaatgaagaaagaaagagatga 480
Query: 281 aagagaaagagaaaaaacaagtgagaaaacaaaaaacagcaaagaaaaattatttgtacc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagagaaagagaaaaaacaagtgagaaaacaaaaaacagcaaagaaaaattatttgtacc 540
Query: 341 ccacactatcctgagtttacagtttagagctaaaaaatcagatattcacctccacaacta 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccacactatcctgagtttacagtttagagctaaaaaatcagatattcacctccacaacta 600
Query: 401 gcatgagaatatatttacaaaatgaaaattaaacatgatattatatttgttttactgagt 460
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 gcatgagaatatatttacaaaatgaaaattaaacat---attatatttgttttactgagt 657
Query: 461 ttacagaaaactatttatgcagtgacaactgaagaattctttgttttttgttctttttta 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttacagaaaactatttatgcagtgacaactgaagaattctttgttttttgttctttttta 717
Query: 521 ttagatttttttttattttacaatgcaaatgttatatcctttctctggctccaccctgag 580
|||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 718 ttagattttttttt--tttacaatgcaaatgttatctcctttctctggttccaccctgag 775
Query: 581 ttcccctatcccatcctccctccatcgtttctatgagggtatttccccttccaacccact 640
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 776 ttcccctatcccatcctccctccatcgcttctatgagggtatttccccttccaacccact 835
Query: 641 cagtc 645
|||||
Sbjct: 836 cagtc 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1042
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1032
Effective search space: 655320
Effective search space used: 655320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
