Query= MSMg01no525_n18.b1 MSMg01no525_n18.b1 CHROMAT_FILE:
MSMg01no525_n18.b1 PHD_FILE: MSMg01no525_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:36 2005
(600 letters)
>mm_chr3_84655005_84656009
Length = 1005
Score = 917 bits (474), Expect = 0.0
Identities = 498/508 (98%), Gaps = 5/508 (0%)
Strand = Plus / Minus
Query: 98 attccactgcaggaaactccagccattagctactgaaagatatttgggttgtttccagta 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 attccactgcaggaaactccagccattagctactgaaagatatttgggttgtttccagta 946
Query: 158 gtcagatattctgaataaatctagtacgccttcctttcaaagagcttcttatgaatgagt 217
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 945 gtcagatattctgaataaatctagtacgccttcctttcaaagagcttcctatgaatgagt 886
Query: 218 gtttacatttctctttggaatacataggaggacaatgtccagtagtagtacatgtttcaa 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gtttacatttctctttggaatacataggaggacaatgtccagtagtagtacatgtttcaa 826
Query: 278 tttgtaagaggctgccagacgtgtcatctaagagggtcctggg-tatcttcccaaggaaa 336
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 825 tttgtaagaggctgccagaggtgtcatctaaaagggtcctggggtatcttcccaaggaaa 766
Query: 337 tctctgttgtgagtccttggaattttagcccttctggctattttttgatggctatcttgc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tctctgttgtgagtccttggaattttagcccttctggctattttttgatggctatcttgc 706
Query: 397 aggctaaactttcacctccctaatgactgacatgagtatctttttctacattaaaaatat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aggctaaactttcacctccctaatgactgacatgagtatctttttctacattaaaaatat 646
Query: 457 agtacatgtaaagcataaggccagaatagttttaagaaagagaga----cagacaagaca 512
|||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 645 agtacatgtagagcataaggccagaatagttataagaaagagagagagacagacaagaca 586
Query: 513 gacagtgaagccccatgagaataggctgagacagtaggctaaaggtgaaattatgtgagt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gacagtgaagccccatgagaataggctgagacagtaggctaaaggtgaaattatgtgagt 526
Query: 573 gaggactgctaactcagatttagacttg 600
||||||||||||||||||||||||||||
Sbjct: 525 gaggactgctaactcagatttagacttg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1005
Length adjustment: 10
Effective length of query: 590
Effective length of database: 995
Effective search space: 587050
Effective search space used: 587050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_n18.g1 MSMg01no525_n18.g1 CHROMAT_FILE:
MSMg01no525_n18.g1 PHD_FILE: MSMg01no525_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:37 2005
(548 letters)
>mm_chr3_84485964_84486911
Length = 948
Score = 793 bits (410), Expect = 0.0
Identities = 492/548 (89%), Gaps = 45/548 (8%)
Strand = Plus / Plus
Query: 1 actgcagtgtgattacaaagagagataaactattgagcggctctgcgctgctcaacttgg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actgcagtgtgattacaaagagagataaactattgagcggctctgcactgctcaacttgg 260
Query: 61 ccatcctgtggagggatggcctagccagagcacagcttaaagccactcatcttttcttag 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ccatcctgtggagggatgacctagccagagcacagcttaaagccactcatctttccttag 320
Query: 121 gcatcaaaccttttgccttaaaatttttttcaccaaccaactcatgcgtcttctgcatgt 180
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gcatcaaaccttttgccttaaattttttttcaccaaccgactcatgcgtcttctgcatg- 379
Query: 181 aatattttctgctgtcagaccaatcagacagccctaccccatgacagaacaaaacccctt 240
|||||||||||||||||
Sbjct: 380 -------------------------------------------acagaacaaaacccctt 396
Query: 241 cagccaccccgtcactgctgggatgaggtgaagttctttcccactctgtgaagggtatct 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 397 cagccaccccgtcactgctgggacaaggtgaagttctttcccactctgtgaagggtatct 456
Query: 301 aatggcactcaagggtcagacagagtaaccttgcttctgctttgaaatagggaaagttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatggcactcaagggtcagacagagtaaccttgcttctgctttgaaatagggaaagttcc 516
Query: 361 ggtgtgattatttttcttgttgctttcgaccaaagcaacttaaggaaagaacagcttatt 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 517 ggtgtgattatttttcttgttgctt-cgaccaaagcaacttaaggaaagaacagcttatt 575
Query: 421 atgggtcacaggccaagggttcagttcctcatggttgggaggacatggtgacaggacagg 480
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 576 atgggtcacagaccaagggttcagtccctcatggttgggaggacatggtgacaggacagg 635
Query: 481 gggcagatggcaatattgccacagttggaaagcagggagggatgaaatgtgatggtcagc 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 636 gggcagctggcaatattgccacagttggaaagcagggagggatgaaatgtgatggccagc 695
Query: 541 tcttgggt 548
||||||||
Sbjct: 696 tcttgggt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
