XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTA
TTCCTCTGCCCACTCAGGCTCATAGATCTTTCTCAGAAGACAAATATGTA
CAATGCCCTTTTACACAGACAAATTTCCTCTCATCACCTGACAGACTTAG
GAGTAAATCACTGCTCTTCTTTCCATTTTTTTCTCTTCTCCTTTGTGCTT
ATTCAAAAGTTTTCAAAACTGGAGGCCACAGAACCAGGTAGGCATGGGCC
CAACTTGAGCTCATAATGTCAACGTTTAACTCTTTGGTTGACTTTCAGCT
CACATTTTTTAATATCTTCAAGATGATGGACAAATGTCTACTGAATGGGG
TACTCTAAGACCACAGAGTGATTTTTCTATAACTCAAACAGAAAGTATTG
AATTAGTACCCATGGTAAAAGATAATAGAGAACCTTCAGATATGAGCAGA
GTCAACAAAATGTTCTGTATCTGTTCTTTGCTCTCCATGTGTGTGTTCCA
CATAACTCAACCTAACCAATAGTCACAAGAACCATATTAAGCTGAAGATC
AATTCATAATGCATGCACAACCTGTAGCATAAATTACATCTGGACTTCCG
TCTCTGTTTCTACAAGGTGACTTGAATGCTGTCCGTTCTCATAACTGTCC
CCAACTCTGGGCTTCTCTTTTTCTTGGATTATGCAGCTGTGAATTCTCTT
ACCACCACAATGCATTTTTCAGTGAGTCCTTACG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
ACTGAGATTCCACTTCACTCCAGTCAGAATGGCAAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAG
GTTCCTCAGAAAATTGGACATAATACTACTGGAGGATCCCGCAATACCTC
TCCTGGGCATATATCCAGAAGATGTCCCAACCGCTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAGGA
GCCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAACCCA
ATCACAAAGGAACTCGCACAATGTGTACTCACAGATAAGTGGATATTAGC
CCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAACACATG
AAATTCAAGAAGAACGAAGACCAAAGTATTATTGTCATTTG

Query= MSMg01no526_a06.b1 MSMg01no526_a06.b1 CHROMAT_FILE:
MSMg01no526_a06.b1 PHD_FILE: MSMg01no526_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:49 2005
         (573 letters)



>mm_chr3_110161388_110162361
          Length = 974

 Score = 1094 bits (566), Expect = 0.0
 Identities = 569/570 (99%), Gaps = 1/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttattcctctgcccactcaggctcatagatctttctcagaagacaaatatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttattcctctgcccactcaggctcatagatctttctcagaagacaaatatgt 264

                                                                       
Query: 65  acaatgcccttttacacagacaaatttcctctcatcacctgacagacttaggagtaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatgcccttttacacagacaaatttcctctcatcacctgacagacttaggagtaaatc 324

                                                                       
Query: 125 actgctcttctttccattttttt-ctcttctcctttgtgcttattcaaaagttttcaaaa 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgctcttctttccattttttttctcttctcctttgtgcttattcaaaagttttcaaaa 384

                                                                       
Query: 184 ctggaggccacagaaccaggtaggcatgggcccaacttgagctcataatgtcaacgttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaggccacagaaccaggtaggcatgggcccaacttgagctcataatgtcaacgttta 444

                                                                       
Query: 244 actctttggttgactttcagctcacattttttaatatcttcaagatgatggacaaatgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actctttggttgactttcagctcacattttttaatatcttcaagatgatggacaaatgtc 504

                                                                       
Query: 304 tactgaatggggtactctaagaccacagagtgatttttctataactcaaacagaaagtat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactgaatggggtactctaagaccacagagtgatttttctataactcaaacagaaagtat 564

                                                                       
Query: 364 tgaattagtacccatggtaaaagataatagagaaccttcagatatgagcagagtcaacaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaattagtacccatggtaaaagataatagagaaccttcagatatgagcagagtcaacaa 624

                                                                       
Query: 424 aatgttctgtatctgttctttgctctccatgtgtgtgttccacataactcaacctaacca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgttctgtatctgttctttgctctccatgtgtgtgttccacataactcaacctaacca 684

                                                                       
Query: 484 atagtcacaagaaccatattaagctgaagatcaattcataatgcatgcacaacctgtagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagtcacaagaaccatattaagctgaagatcaattcataatgcatgcacaacctgtagc 744

                                         
Query: 544 ataaattacatctggacttccgtctctgtt 573
           ||||||||||||||||||||||||||||||
Sbjct: 745 ataaattacatctggacttccgtctctgtt 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)