BAC Information

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BAC

Clone NameMSMg01-526L14
Chromosome3 (Build37)
Map Location 41,442,338 - 41,443,002
singlet/doubletsinglet
Overlap geneSclt1
Upstream geneIntu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L14.T7 (MSMg01no526_l14.b1)MSMg01-526L14.TJ (MSMg01no526_l14.g1)
ACCAG596248AG596249
length724726
length of high quality
(start - end)		669 (39 - 707)650 (69 - 718)
definitionCHROMAT_FILE: MSMg01no526_l14.b1 PHD_FILE: MSMg01no526_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:44 2005CHROMAT_FILE: MSMg01no526_l14.g1 PHD_FILE: MSMg01no526_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
ACGAAGAATAATTTTATCCAGGATTTTTGCTTGGAATATATGTTTGTTAA
AGTATAGACAAACTGACAAACTTAATATTTCAGCAAAATAGTTTTCCTTT
TAATTTTTATTTCGTGGTATGGAGCTCAGGGCTTCATGCATGCCTACACA
AGTTTATTTAACTATTGAGTGATATCTCTAGGTCTCAATTCATTTTAGAA
TTGTAGTCAGGGGCTCAATAAGTTGCCCAGAATGGCCTTACCTCCACTCT
ATAGCCCAGGCAGAGCTGGACTTGTCATCTCCTGCTTAAGCCTCCTCAAT
TGCAGTTAAGTTCTCAGCACCTATACTGAAGTTACAACTACTTGTGGCTC
CTGTTTTTAGGGATCTGCCACCCTCTTCTGGCCTTCCACATGTGTGCTTA
TAAAACACATAATAAAAATAAAAAAGTCTTAAAATCAACCTAAGGATATT
CAAATCCTCCACTGATTTCCCCCTGTTGCACTTTAGATTTTAATTTGAAC
TAATCTTCAATATTTTACTGGAAATAAGTAAATACATTCTAATAGCCAGT
GTATGATCTGGTTGCCTTTGCTCCCGAAACTTCTCTCACACAGGCGCTTG
CCTTCACATCAGAATTAGTGAGAATGCAATAATGACATTTCTTAGAAGGC
TCCTAAAAGTAAAATACATTTGAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGTCTGAGAAGCA
CCTGAAAAAATATTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGTAACAGCATATGCTGACAAGGATGGGGAGAAAGAGGAACACTCCT
TCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGTGGTTCCTCAGAAAATTGGACATTGTACTACAGGAAGATCCCACAATA
CCTCTCCTGGGCATATATTCAGAAGATGTTCCAACTGGTAAGAAGGACAC
ATGTTCCACTATGTTCATAGCAGCCTTATTTATATTAGCCAGAAGCTGGA
AAAACCAAGATATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACCATGGAGTACTATTCAGCTATTAAAAAGAATGATTTTATGAAA
TTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGATGTAAC
CCAATCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATT
AGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATCTGCAAAACAC
ATGAAACTCAAGAAGAACAAAGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l14.b1 MSMg01no526_l14.b1 CHROMAT_FILE:
MSMg01no526_l14.b1 PHD_FILE: MSMg01no526_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:44 2005
         (669 letters)



>mm_chr3_41442135_41443203
          Length = 1069

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaacgaagaataattttatccaggatttttgcttggaatatatgtttgttaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaacgaagaataattttatccaggatttttgcttggaatatatgtttgttaaa 263

                                                                       
Query: 64  gtatagacaaactgacaaacttaatatttcagcaaaatagttttccttttaatttttatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtatagacaaactgacaaacttaatatttcagcaaaatagttttccttttaatttttatt 323

                                                                       
Query: 124 tcgtggtatggagctcagggcttcatgcatgcctacacaagtttatttaactattgagtg 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtggtatggagctcagggcttcatgcatgcctacacaagtttatttaactattgagtg 383

                                                                       
Query: 184 atatctctaggtctcaattcattttagaattgtagtcaggggctcaataagttgcccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatctctaggtctcaattcattttagaattgtagtcaggggctcaataagttgcccaga 443

                                                                       
Query: 244 atggccttacctccactctatagcccaggcagagctggacttgtcatctcctgcttaagc 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 atggccttacctccactctatagcccaggcagatctggacttgtcatctcctgcttaagc 503

                                                                       
Query: 304 ctcctcaattgcagttaagttctcagcacctatactgaagttacaactacttgtggctcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcctcaattgcagttaagttctcagcacctatactgaagttacaactacttgtggctcc 563

                                                                       
Query: 364 tgtttttagggatctgccaccctcttctggccttccacatgtgtgcttataaaacacata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtttttagggatctgccaccctcttctggccttccacatgtgtgcttataaaacacata 623

                                                                       
Query: 424 ataaaaataaaaaagtcttaaaatcaacctaaggatattcaaatcctccactgatttccc 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 ataaaaataaaaaagtcttaaaatcaagctaaggatattcaaatcctccactgatttccc 683

                                                                       
Query: 484 cctgttgcactttagattttaatttgaactaatcttcaatattttactggaaataagtaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctgttgcactttagattttaatttgaactaatcttcaatattttactggaaataagtaa 743

                                                                       
Query: 544 atacattctaatagccagtgtatgatctggttgcctttgctcccgaaacttctctcacac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atacattctaatagccagtgtatgatctggttgcctttgctcccgaaacttctctcacac 803

                                                                       
Query: 604 aggcgcttgccttcacatcagaattagtgagaatgcaataatgacatttcttagaaggct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aggcgcttgccttcacatcagaattagtgagaatgcaataatgacatttcttagaaggct 863

                
Query: 664 cctaa 668
           |||||
Sbjct: 864 cctaa 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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