BAC Information

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BAC

Clone NameMSMg01-526O14
Chromosome3 (Build37)
Map Location 68,669,292 - 68,851,844
singlet/doubletdoublet
Overlap gene1110032F04Rik, Ift80, Smc4, Trim59, LOC667272
Upstream geneEG208426, EG545531, LOC631379, Schip1, Il12a, LOC639530
Downstream geneKpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526O14.T7 (MSMg01no526_o14.b1)MSMg01-526O14.TJ (MSMg01no526_o14.g1)
ACCAG596389AG596390
length728724
length of high quality
(start - end)		681 (39 - 719)656 (69 - 724)
definitionCHROMAT_FILE: MSMg01no526_o14.b1 PHD_FILE: MSMg01no526_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:59 2005CHROMAT_FILE: MSMg01no526_o14.g1 PHD_FILE: MSMg01no526_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,851,173 - 68,851,844)(68,669,292 - 68,669,946)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CCCAGGTAGTATATCCCTAGGAGCCTCACACCCACACATTGCACAGCTTG
GTGGCTGTGAGCTCATGGTGTACAGTCACCTCAGCACTCAGGAGTGCCCC
TGCTCAGTATGCCTCTGCTGGGGCTTGTTTGGCCTGCGAGTTGGCACAAT
TGGATAGGACCTTCAGCAGTTCCACATTAGCAGTGGAACATTAGTGCAGT
GACTTTGTTTCTCTTGGATTAACCAAGGATTTGATTAATCTGCAAGCATT
AACCAAGGAAGACCTGCACAGTCTCAGGTCAAGTTTTTCCTAAGTTGGAG
GTGAAGGGCAGATACTTGGGAAACAGGGCTAAAATCAGCGCCCTCAAGCC
CTTCCCAGAGTTGAGTGCCTGTGTTCTACTGGTAAACAGTGATCTGCCTC
ACAATTCACTTGAGGTCAGAAATCTATCTTGAGGCTGGAGCTAACATTAC
ATTAAACAATGTATCCTGGGAAGGAAGAGCTTGCTAAGACTTGTAGCCAA
TTCCTTAGCAGCTGGCAACAAAGTTATCATTGTATGACCTTCATGGCTCA
CCAAAAAAAAAAGCAAAACTAGCAAAAGAAACATTTTCCCTGGGCCTGAA
ATGTTAGAGAAATTTGTCACAGAGATATAATAACAATTTTGTTTAACAAT
GGCTGATTATTTACTTATTTAGGGTCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCCGCCTATGGCTACAGAGTGAGGCCCT
TATGTTCATAAGGGCCTGAAATTTTCAATCTCCGTCCTGGGGCAAGCACT
CCATTTCCTTTTGCACATAGTTTAAACAAAAAAAGTCAGGACATCTTACT
TCGATCTTTCTCCTAGCATGTAGTTTGAAGAAGCCTTTTGCTGACTAGTC
GGGAGTTCACCATGTTGAAAGAGGAATTCTGAATAATGCTCCAGTCAAGA
CAGGAAGACTGGAAGAACAGGAAACCCTACCATCTCTTTCCTGGTCTCTA
AGAGAACTAACGATAACCATCACCACCTAGACCACTGGGTGGAAGAAGGT
TGACTTTGAGACGGTCTAACTGTAGGGGTGGTTTAGTTACTGAAAGCCTG
TCTATAGCAGCAACTCTTGCAGTCGAAGTGACACTGCTTTTTCCGAACAC
TAGAGAAGTTAGATGAAGAACCATGCCACTCTGGAGACTTAGCGTTATAA
ACTTTCCTTTGCCCAAAAGATCTCTGCCTCCTATTTTTTGTTCTGTTTTA
CAGAGATATTTTTTCTAGAAAGATCTTCTAAGCCAGTATCATCCCCATGG
CAGGCCAAGGTGAAAGCTTTGCATAGTGAACTTTTCCATAAGCATTCATC
GATGGCAAATCGTTTCATTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_o14.b1 MSMg01no526_o14.b1 CHROMAT_FILE:
MSMg01no526_o14.b1 PHD_FILE: MSMg01no526_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:59 2005
         (681 letters)



>mm_chr3_68850970_68852050
          Length = 1081

 Score = 1292 bits (668), Expect = 0.0
 Identities = 671/672 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcccaggtagtatatccctaggagcctcacacccacacattgcacagcttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ggaattcttcccaggtagtatatccctaggagcctcacacccacacattgcacagcttgg 816

                                                                       
Query: 64  tggctgtgagctcatggtgtacagtcacctcagcactcaggagtgcccctgctcagtatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tggctgtgagctcatggtgtacagtcacctcagcactcaggagtgcccctgctcagtatg 756

                                                                       
Query: 124 cctctgctggggcttgtttggcctgcgagttggcacaattggataggaccttcagcagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cctctgctggggcttgtttggcctgcgagttggcacaattggataggaccttcagcagtt 696

                                                                       
Query: 184 ccacattagcagtggaacattagtgcagtgactttgtttctcttggattaaccaaggatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ccacattagcagtggaacattagtgcagtgactttgtttctcttggattaaccaaggatt 636

                                                                       
Query: 244 tgattaatctgcaagcattaaccaaggaagacctgcacagtctcaggtcaagtttttcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgattaatctgcaagcattaaccaaggaagacctgcacagtctcaggtcaagtttttcct 576

                                                                       
Query: 304 aagttggaggtgaagggcagatacttgggaaacagggctaaaatcagcgccctcaagccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagttggaggtgaagggcagatacttgggaaacagggctaaaatcagcgccctcaagccc 516

                                                                       
Query: 364 ttcccagagttgagtgcctgtgttctactggtaaacagtgatctgcctcacaattcactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttcccagagttgagtgcctgtgttctactggtaaacagtgatctgcctcacaattcactt 456

                                                                       
Query: 424 gaggtcagaaatctatcttgaggctggagctaacattacattaaacaatgtatcctggga 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 455 gaggtcagaaatctatcttgaggctggagctaacattatattaaacaatgtatcctggga 396

                                                                       
Query: 484 aggaagagcttgctaagacttgtagccaattccttagcagctggcaacaaagttatcatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggaagagcttgctaagacttgtagccaattccttagcagctggcaacaaagttatcatt 336

                                                                       
Query: 544 gtatgaccttcatggctcaccaaaaaaaaaagcaaaactagcaaaagaaacattttccct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtatgaccttcatggctcaccaaaaaaaaaagcaaaactagcaaaagaaacattttccct 276

                                                                       
Query: 604 gggcctgaaatgttagagaaatttgtcacagagatataataacaattttgtttaacaatg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gggcctgaaatgttagagaaatttgtcacagagatataataacaattttgtttaacaatg 216

                       
Query: 664 gctgattattta 675
           ||||||||||||
Sbjct: 215 gctgattattta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_o14.g1 MSMg01no526_o14.g1 CHROMAT_FILE:
MSMg01no526_o14.g1 PHD_FILE: MSMg01no526_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:59 2005
         (656 letters)



>mm_chr3_68669092_68670147
          Length = 1056

 Score = 1251 bits (647), Expect = 0.0
 Identities = 653/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcccgcctatggctacagagtgaggcccttatgttcataagggcctgaaattttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aaggcccgcctatggctacagagtgaggcccttatgttcataagggcctgaaaatttcaa 260

                                                                       
Query: 61  tctccgtcctggggcaagcactccatttccttttgcacatagtttaaacaaaaaaagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccgtcctggggcaagcactccatttccttttgcacatagtttaaacaaaaaaagtca 320

                                                                       
Query: 121 ggacatcttacttcgatctttctcctagcatgtagtttgaagaagccttttgctgactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacatcttacttcgatctttctcctagcatgtagtttgaagaagccttttgctgactag 380

                                                                       
Query: 181 tcgggagttcaccatgttgaaagaggaattctgaataatgctccagtcaagacaggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgggagttcaccatgttgaaagaggaattctgaataatgctccagtcaagacaggaaga 440

                                                                       
Query: 241 ctggaagaacaggaaaccctaccatctctttcctggtctctaagagaactaacgataacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaagaacaggaaaccctaccatctctttcctggtctctaagagaactaacgataacc 500

                                                                       
Query: 301 atcaccacctagaccactgggtggaagaaggttgactttgagacggtctaactgtagggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaccacctagaccactgggtggaagaaggttgactttgagacggtctaactgtagggg 560

                                                                       
Query: 361 tggtttagttactgaaagcctgtctatagcagcaactcttgcagtcgaagtgacactgct 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tggtttagttactgaaagcctgtctatagcagcaactcttgcagtccaagtgacactgct 620

                                                                       
Query: 421 ttttccgaacactagagaagttagatgaagaaccatgccactctggagacttagcgttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttccgaacactagagaagttagatgaagaaccatgccactctggagacttagcgttat 680

                                                                       
Query: 481 aaactttcctttgcccaaaagatctctgcctcctattttttgttctgttttacagagata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactttcctttgcccaaaagatctctgcctcctattttttgttctgttttacagagata 740

                                                                       
Query: 541 ttttttctagaaagatcttctaagccagtatcatccccatggcaggccaaggtgaaagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttctagaaagatcttctaagccagtatcatccccatggcaggccaaggtgaaagct 800

                                                                  
Query: 601 ttgcatagtgaacttttccataagcattcatcgatggcaaatcgtttcattattt 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgcatagtgaacttttccataagcattcatcgatggcaaatcgtttcattattt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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