GGGGGTNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCTTTTTCTGATTTTTCCACACCAGAGCTTTTGACT
TCTTTGTTCAGCCAATGGGGCAGTGTTATTAAAGTTCTGTATCCTCGTAC
CTTCCCTGTCTTGACAGTATGATAGAGCATCATTTGGTACAGGGGAAATG
TCTCATGGAAGAGTCAGCACTCATAGGCACAGCACCAACACAGGACTTTG
GTACATACAGTGGCTTTCTCAGTCTTGGTTTCTCATTGCTTCTTCTCTCT
TTCATATGCACAAAGTTTAAGTTTATGAAATCCAAGGCCAGTGGTGCTTT
CTTCTTCTTGGAGAGTCTAAAAATTGCCTCATTATTTTGCAAATCCATCA
TCCACCATGGCGGTTCTGACTTTTATAGTTCAGTGGTGATTATTCTTAAT
CTTAACCAAGGCCTTCACAGAACTTCACATCATGTACTTCTGGATAGGTT
TAGACTCTGCCTTTTATCTTCACTGTAATTTCTTTCATTTTCACTTTCTG
GCTTTGGAAGAGTCTGATAATTCTGAGTGATGCCAATGTCCCTTTCTTTC
TATGTTTGTTACTGATACTCTTTGCTTATCTATTTCTCTTGCAGTTTTAT
TTAACCTAGGCTGGAACATTCTCCCTTTGTGTGCACTTTCTGTCTTGTGC
AGTTACCTATCTATCTATCTATCTATCTATCT

NNNNNNCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTAACCTGGGGCA
GAGCAAGTTCTAGGTGAAGATTAAATCCAGGCATGATGGCACACACCACT
TCTCTCCATTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTGCTTTT
ACTATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCAAGACTTTTAAC
ATGAAGGAGTGTTGAATTTTATCAAATGCTTTTTCAGTATTTAATGAAGT
GATCATGTGTTTTTTTTTCCTTTGAGTTTGTTTATGTAGTGGATTACAAT
GATGGATTTCCAGATATTGAATCATCCCTGCATCTCGGGGATGAAGCCTA
CTTGATCATGGTGAATGATTGTTTTGATGTGTTCTTGGATTCAGTTGGCA
AGAATTTTATTGTGTATTTTTGCATTGACATTTATAAGGGAAACTTGTCT
GAAGTTCTCTTTCTTAGGTGGGACTTTGTGTGGTTTTGGTATCAGCATAG
TTGTGGCTTCATAGAACAAATTGGGTAGTGTTACTTCTGTTTCTATTTTG
TGGAATAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTGAAGGTCTGATA
GAATTCTGCACAAAACCATATGGTCCTGGGCTTTTTTTGGTTGGGAGACT
ATTAATGACTGCTTCTACTTCTTTAGGGGTTATGGGAA

Query= MSMg01no527_a01.b1 MSMg01no527_a01.b1 CHROMAT_FILE:
MSMg01no527_a01.b1 PHD_FILE: MSMg01no527_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:06 2005
         (679 letters)



>mm_chr3_18655289_18656367
          Length = 1079

 Score = 1236 bits (639), Expect = 0.0
 Identities = 666/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctttttctgatttttccacaccagagcttttgacttctttgttcagccaatg 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcttcacctgatttttccacaccagagcttttgacttctttgttcagccaatg 264

                                                                       
Query: 65  gggcagtgttattaaagttctgtatcctcgtaccttccctgtcttgacagtatgatagag 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gggcagtgttattaaagttctgtatcctcgtacctgccctgtcttgacagtatgatagag 324

                                                                       
Query: 125 catcatttggtacaggggaaatgtctcatggaagagtcagcactcataggcacagcacca 184
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 325 catcatttggtacaggggaaatgtctcagggaagactcagcactcataggcacagcacca 384

                                                                       
Query: 185 acacaggactttggtacatacagtggctttctcagtcttggtttctcattgcttcttctc 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 acacaggactttggtacatacagtggctttctcagtcttggtttctcactgcttcttctc 444

                                                                       
Query: 245 tctttcatatgcacaaagtttaagtttatgaaatccaaggccagtggtgctttcttcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttcatatgcacaaagtttaagtttatgaaatccaaggccagtggtgctttcttcttc 504

                                                                       
Query: 305 ttggagagtctaaaaattgcctcattattttgcaaatccatcatccaccatggcggttct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 ttggagagtctaaaaattgcctcattattttgcaaatccatcatccaccatggcggatct 564

                                                                       
Query: 365 gacttttatagttcagtggtgattattcttaatcttaaccaaggccttcacagaacttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacttttatagttcagtggtgattattcttaatcttaaccaaggccttcacagaacttca 624

                                                                       
Query: 425 catcatgtacttctggataggtttagactctgccttttatcttcactgtaatttctttca 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 catcatgtacttctggataggtttagactctgccttttatcgtcactgtaatttctttca 684

                                                                       
Query: 485 ttttcactttctggctttggaagagtctgataattctgagtgatgccaatgtccctttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttcactttctggctttggaagagtctgataattctgagtgatgccaatgtccctttct 744

                                                                       
Query: 545 ttctatgtttgttactgatactctttgcttatctatttctcttgcagttttatttaacct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctatgtttgttactgatactctttgcttatctatttctcttgcagttttatttaacct 804

                                                                       
Query: 605 aggctggaacattctccctttgtgtgcactttctgtcttgtgcagttacctatctatcta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggctggaacattctccctttgtgtgcactttctgtcttgtgcagttacctatctatcta 864

                          
Query: 665 tctatctatctatct 679
           |||||||||||||||
Sbjct: 865 tctatctatctatct 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)