Query= MSMg01no527_e16.b1 MSMg01no527_e16.b1 CHROMAT_FILE:
MSMg01no527_e16.b1 PHD_FILE: MSMg01no527_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:29 2005
(664 letters)
>mm_chr3_8805783_8806846
Length = 1064
Score = 1102 bits (570), Expect = 0.0
Identities = 629/664 (94%), Gaps = 26/664 (3%)
Strand = Plus / Minus
Query: 2 tgtgttctgaggagggaaacgagaaggcgtctcagttggtatgttccacctggatacaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgtgttctgaggagggaaacgagaaggcgtctcagttggtatgttccacctggatacaaa 736
Query: 62 agaacaaaaatactggctggaagaaagggccaagcagagatgacaggaggtgtacaagga 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 735 agaacaaaaatactggctggaagaaagggccaagcagagctgacaggaggtgtacaagga 676
Query: 122 gtggtgcaca-ctctgagacaagctccaaaaagataatgtctagagacgatgagacctga 180
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtggtgcacagc-ctgagacaagctccaaaaagataatgtctagagacgatgagacctga 617
Query: 181 agggctaagtcaaagaacagttgtttaataatgagcaaaatcaagttactagttgggtgt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 616 agggctaagtcaaagaacagttgtttaataatgagcaaaatcaagtaactagttgggtgt 557
Query: 241 tctagagaagacggtccctatgaacagaagctgactgaacaatcactgttagtgtgctga 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctagagacgacggtccctatgaacagaagctgactgaacaatcactgttagtgtgctga 497
Query: 301 gacactgtccaagaatagagtcgttcagggaactgagtgctttggagagaactccaggtg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gacactgtctaagaatagagtcgttcagggaactgagtgctttggagagaactccaggtg 437
Query: 361 agcaagagtcttcacaaacatggaactgctcttggaaaatgttttgtactcctcccaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcaagagtcttcacaaacatggaactgctcttggaaaatgttttgtactcctcccaggt 377
Query: 421 ataggggataggagcgagttgacttcagctgatgttactcttatgcctccgtggaaaaac 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtaggggataggagcgagttgacttcagctgatgttactcttatgcctccgtggaaaaac 317
Query: 481 ctggtttagcccatgtggtttgtccttgtgattgaacaccttgctcatgtgattcttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctggtttagcccatgtggtttgtccttgtgattgaacaccttgctcatgtgattcttctt 257
Query: 541 aaccctcagcgtataaattgtctgatggttgcatgagactttagtcggcctcattttcag 600
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaccctcggcgtataaattgtctgatggttgcatgagactttagtcggcctcatt----- 202
Query: 601 gccctgctttcccaggttcacagcgccaagtaagcggtaagcgcagcagcagcacagtga 660
||||||| |||||||||||||||||||| |||||||||||
Sbjct: 201 -------------------acagcgctgagtaagcggtaagcgcagcaacagcacagtga 161
Query: 661 ggac 664
||||
Sbjct: 160 ggac 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_e16.g1 MSMg01no527_e16.g1 CHROMAT_FILE:
MSMg01no527_e16.g1 PHD_FILE: MSMg01no527_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:29 2005
(611 letters)
>mm_chr3_8659526_8660536
Length = 1011
Score = 1151 bits (595), Expect = 0.0
Identities = 607/611 (99%)
Strand = Plus / Plus
Query: 1 tgacaacatgaggtcaatatccagaacccatagtgggaggagcaaggttatcctgaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaacatgaggtcaatatccagaacccatagtgggaggagcaaggttatcctgaccaa 260
Query: 61 ggtcaacctctaacctccacacccaggctgaggcacacctacgcacatgcacacaagggt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggtcaacctctaacctccacacccaggctgaggcacacctatgcacatgcacacaagggt 320
Query: 121 ggtagtggtgatcaataacttattgttattaatttttaaaaacttcaacagttgaaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagtggtgatcaataacttattgttattaatttttaaaaacttcaacagttgaaaagc 380
Query: 181 actagaccaaacctgtgtaggaacaagatctgatagaatggctcatgaaaacctatgctt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagaccaaacctgtgtaggaacaagatctgatagaatggctcatgaaaacctatgctc 440
Query: 241 tctcaactggcctgatgcctgctttcttcccagtcagcacatgtccttctgagcagacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaactggcctgatgcctgctttcttcccagtcagcacatgtccttctgagcagacac 500
Query: 301 caagggccctcgttccctgcctagtccaaccactttatttggcagacgacctaaatagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagggccctcgttccctgcctagtccaaccactttatttggcagacgacctaaatagcc 560
Query: 361 tctacaaaattttcatgacctctccaaggtcattcaagtagataaaggcagagctgcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctacaaaattttcatgacctctccaaggtcattcaagtagataaaggcagagctgcagc 620
Query: 421 tggggttctagcctctttcccaggagcccacattccctagagtttgagttgtggaagaaa 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tggggttctagcctctttcccaggagcccacattccctagagcttgagttgtggaagaaa 680
Query: 481 ctgggccacagcaatgtctcagatgatgttggctctgaagttattttaaatataaatcag 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggccacagcaacgtctcagatgatgttggctctgaagttattttaaatataaatcag 740
Query: 541 catcagaaactaatgaaggcatcaaagctgtggtactggtatagaccagaaggactggga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catcagaaactaatgaaggcatcaaagctgtggtactggtatagaccagaaggactggga 800
Query: 601 aactgtaacta 611
|||||||||||
Sbjct: 801 aactgtaacta 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
