Query= MSMg01no527_f15.b1 MSMg01no527_f15.b1 CHROMAT_FILE:
MSMg01no527_f15.b1 PHD_FILE: MSMg01no527_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:33 2005
(604 letters)
>mm_chr3_146072704_146073707
Length = 1004
Score = 1098 bits (568), Expect = 0.0
Identities = 593/602 (98%), Gaps = 3/602 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagattca--tacaagttttagtcctgtaatgttcttgtggcccgtagatact 62
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaagag-caaatacaagttttagtcctgtaatgttcttgtggcccgtagatact 262
Query: 63 taggctcctgaggggtactggctccttaacacgttatcatgctcttctcttggtcttggt 122
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 taggctcctgaggggcactggctccttaacacgctatcatgctcttctcttggtcttggt 322
Query: 123 tttggttcttcccggctagaagacagcgtcttgggtactgttcccctttatagaatagcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttggttcttcccggctagaagacagcgtcttgggtactgttcccctttatagaatagcc 382
Query: 183 ctgtctgtcagatctagaataaaaaggggcaacagcatcttagacatgatcagccaggag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtctgtcagatctagaataaaaaggggcaacagcatcttagacatgatcagccaggag 442
Query: 243 ccatcttcttctgaaatgaagagacaggctcacggccttccgccatgtgctcagtgcttg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccatcttcttctgaaatgaagagacaggctcacggccttccgccatgtgctcagtgcttg 502
Query: 303 ctgagtcagggcctaggggagtgtagctggcgtttcctcctcctggtgtgtagctgaagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgagtcagggcctaggggagtgtagctggcgtttcctcctcctggtgtgtagctgaagg 562
Query: 363 taagctgtctcttagtctcttgcatcaacagaacaaggctgtacccacccattcctttcc 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 taagctgtctcttagtctcttgcatcaacagaacaaggcagtacccacccattcctttcc 622
Query: 423 tacggccatctaaggagtaaggggcggagccagtgagccacaagtggcctgtggtggatg 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 tacggccatctaaggagtaaggggcggagccagtgagccacatgtggcctgtggtggatg 682
Query: 483 gtggcaatgtcactgtctcccttgctggtcttgcacatcagaaggcatatgtcttcttaa 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 683 gtggcaatgtcactgtctcccttgctggtcttgcacatcagaaggcgtatgtcttcttaa 742
Query: 543 ttctcaccccaccgatcttttgccagtctgtggatagcttcataggtctctaaactgtag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttctcaccccaccgatcttttgccagtctgtggatagcttcataggtctctaaactgtag 802
Query: 603 cc 604
||
Sbjct: 803 cc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_f15.g1 MSMg01no527_f15.g1 CHROMAT_FILE:
MSMg01no527_f15.g1 PHD_FILE: MSMg01no527_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:34 2005
(679 letters)
>mm_chr3_146213388_146214468
Length = 1081
Score = 1249 bits (646), Expect = 0.0
Identities = 653/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Minus
Query: 26 agagagagagagagagagagagagagagagagagagagagagagaacatgttctggaaac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 agagagagagagagagagagagagagagagagagagagagagagaacatgttctggaaac 867
Query: 86 atatgactcctatgcctctcactaccactgaaacatgaccaagatcatggatgacagtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 atatgactcctatgcctctcactaccactgaaacatgaccaagatcatggatgacagtaa 807
Query: 146 caatatgccaagttatatgactg--gtcactcctctagaaactaagtggtttggctagat 203
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 806 caatatgccaagttatatgactgaagtcactcctctagaaactaagtggtttggctagat 747
Query: 204 taaattaaattatactcagatttgtctaacacttactggatagatagtagggttcattca 263
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 746 taaattaaattatactcagatttatctaacacttactggatagatagtagggttcattca 687
Query: 264 aatacttagttttctattattcataaagtgggaatggcaggcctatagtctcccacccaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatacttagttttctattattcataaagtgggaatggcaggcctatagtctcccacccaa 627
Query: 324 acagagcctgagatctcgaatactgtgtcacagttcatgccgagagattccttcacttaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acagagcctgagatctcgaatactgtgtcacagttcatgccgagagattccttcacttaa 567
Query: 384 gcaacaaaatgaagctgaggattttggcttattccagataaaaagccagttagagctgga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcaacaaaatgaagctgaggattttggcttattccagataaaaagccagttagagctgga 507
Query: 444 tccttacgtgcaattgtgtgcgttttccctctgttccagagtgccttctctaattgacta 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tccttacgtgcaattgtgtgcgttttccctctgttccagagtgccttctctaattgacta 447
Query: 504 gttttagaaaagatcacctggaatgaactctgaatgagttacaagaggggggaaaaggtc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttttagaaaagatcacctggaatgaactctgaatgagttacaagaggggggaaaaggtc 387
Query: 564 caagtctagttgacctgagaaaaatttatgtgttgaagttaagttcttataaaatgaaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caagtctagttgacctgagaaaaatttatgtgttgaagttaagttcttataaaatgaaat 327
Query: 624 cccacaacacttcagctacaacataaaagtattagggctgagtaacatgcatttta 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccacaacacttcagctacaacataaaagtattagggctgagtaacatgcatttta 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1081
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1071
Effective search space: 716499
Effective search space used: 716499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
