Query= MSMg01no527_h19.b1 MSMg01no527_h19.b1 CHROMAT_FILE:
MSMg01no527_h19.b1 PHD_FILE: MSMg01no527_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:44 2005
(685 letters)
>mm_chr3_66181115_66182196
Length = 1082
Score = 1218 bits (630), Expect = 0.0
Identities = 669/682 (98%), Gaps = 3/682 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttagtctacttaaccctgtcgctttaaaccagtgtcacgcagaagatacctga 63
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ggaattcctagcctacttaaccctgtcgctttaaaccagtgtcacgcagaagatacctga 823
Query: 64 gcagtttttattttgcgcattaaaaagggaactgctgttaactattgagcacactgagaa 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gcagtttttattttgtgcattaaaaagggaactgctgttaactattgagcacactgagaa 763
Query: 124 acagagaaagtactcgcacagattttctgataaccctgggagagaaagctttttattttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 acagagaaagtactcgcacagattttctgataaccctgggagagaaagctttttattttg 703
Query: 184 ttcccacagcacgcggttggggtaggatgtcacagatgaatgtgctgcagagagagagac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttcccacagcacgcggttggggtaggatgtcacagatgaatgtgctgcagagagagagac 643
Query: 244 acaaatgcatccctctgcccacagagtatccacagagctggagatacaatgcagtttagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 acaaatgcatccctctgcccacagagtatccacagagctggagatacaatgcagtttagg 583
Query: 304 ggtcttgattgattcatgctctcttccagttaaagaattaaaggcaagaaaatgctggag 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggtcttgattgattcatgctctcttccagttaaagaattaaaggcaagaaaatgctggaa 523
Query: 364 cacaccaggtagcagtagtaaatctcgagcactgcagacggagtcaacagttaaaggaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacaccaggtagcagtagtaaatctcgagcactgcagacggagtcaacagttaaaggaag 463
Query: 424 gcgtttatgggggggtgagaaaacacacatgcggcagagacgcagagaaaaaaagaccct 483
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 462 gcgtttat-ggggggtgagaaaacacacatgcggcagagacgcagag-aaaaaagaccct 405
Query: 484 ctgagaagcagagcaaaatctcagagagctaaaagtccactctcttctgcaggactgggc 543
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgaaaagcagagcaaaaactcagagagctaaaagtccactctcttctgcaggactgggc 345
Query: 544 ttttaaaatctgcctctactttacggttggtcagagtagagagagataagatggctgatt 603
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 344 ttttaaaatctgcctctactttacggttggtcagattaaagagagataagatgactgatt 285
Query: 604 ggtccaaactgttgtgtggcatgtcctgagctggcctgttgagcctctccatcagtgggg 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 284 ggtccaaactgttgtgtggcatgtcctgagctggcctgttgagcctctccatcagtaggg 225
Query: 664 gaggcaaaaagctgcctggctt 685
||||| ||||||||||||||||
Sbjct: 224 gaggc-aaaagctgcctggctt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1082
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1072
Effective search space: 723600
Effective search space used: 723600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_h19.g1 MSMg01no527_h19.g1 CHROMAT_FILE:
MSMg01no527_h19.g1 PHD_FILE: MSMg01no527_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:44 2005
(567 letters)
>mm_chr3_66046256_66047218
Length = 963
Score = 975 bits (504), Expect = 0.0
Identities = 550/568 (96%), Gaps = 6/568 (1%)
Strand = Plus / Plus
Query: 1 atttttatataattctacagaccacacgactgcttcctatagttttaaaatgcttggcgt 60
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 201 atttttatataattctacagaccacgcggctgcttcctatagttttaaaatgcttggcgt 260
Query: 61 acctgtaatttttatgaaatttgttttcagaaaatgttttcaaggtggcaaaaatgaaag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 acctgtaatttttatgaaatttgttttcagaaaatgtttgcaaggtggcaaaaatgaaag 320
Query: 121 cataattgtttttccgggcttgcagcaaatttaatcacacatgaagtaaagttagcaatt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataattgtttttctgggcttgcagcaaatttaatcacacatgaagtaaagttagcaatt 380
Query: 181 ttactccgaggccaaaggaaattaggaacaaaagcactagctaatattattaatggcaaa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactccgaagccaaaggaaattaggaacaaaagcactagctaatattattaatggcaaa 440
Query: 241 tctttccaggggagcacaggctgagtgacaaacacaaccatccgtggtgctcaggcatat 300
|||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctttctaggcgagcacaggctgagtgacaaacacaaccatccctggtgctcaggcatat 500
Query: 301 ctgggtgtctggcagacagtgagctagacaggccagaagtctagggtgacactgagggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggtgtctggcagacagtgagctagacaggccagaagtctagggtgacactgagggac 560
Query: 361 cccccccccccaagtatcaggagcatctgatacttgagcttcaggtggagacaacatctt 420
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 561 cccccc-----aagtatcaggagcatctgatacttgagcttcaggtagagacaacatcct 615
Query: 421 ggtccttggcaggcagtaggcattctgagaatggagttgggtaagacagggtgtgtggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtccttggcaggcagtaggcattctgagaatggagttgggtaagacagggtgtgtggaa 675
Query: 481 agctggggtggaacagggcctatggatggacagttgcttttagatttcaaaaaatgaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agctggggtggaacagggcctatggatggacagttgcttttagatttcaaaaaatgaaag 735
Query: 541 aaaatgctttgggtttggtggtg-tggt 567
| ||||||||||||||| ||||| ||||
Sbjct: 736 agaatgctttgggtttgatggtggtggt 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space: 530821
Effective search space used: 530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
