Query= MSMg01no527_i13.b1 MSMg01no527_i13.b1 CHROMAT_FILE:
MSMg01no527_i13.b1 PHD_FILE: MSMg01no527_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:48 2005
(680 letters)
>mm_chr3_137772557_137773637
Length = 1081
Score = 1203 bits (622), Expect = 0.0
Identities = 664/678 (97%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgatgctggaaagatattctgtgcatctttatgttacaggattagcattgc 63
|||||||||||| | ||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattctttgagggtggtatgatattctgtgcatctttatgttacaggattggcattgc 263
Query: 64 acctagtataaagtcagcattcattaaataatgacacctgagtattttatatatgggttt 123
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 264 acctagtataaagtcagcattcactaaataatgatacctgagtattttatatatgggttt 323
Query: 124 tatccttactgatgatatttaacacataaattaagcaaatagatcagctctttaacaatt 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 tatccttactgatgatatttaacacataaattaagcaaatatatcagctctttaacaatt 383
Query: 184 attgaaatcataaatgtagggatttgtcattctcaggtgtctgagatgtaatgctaaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgaaatcataaatgtagggatttgtcattctcaggtgtctgagatgtaatgctaaatt 443
Query: 244 taatttctagcatagccgaaatcattttcaatgtccatgtttttcatagactttccttgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatttctagcatagccgaaatcattttcaatgtccatgtttttcatagactttccttgc 503
Query: 304 ttgtttatcatgcagtctgtctgtaggctgctccctatggaatcatttgggctcagtggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgtttatcatgcagtctgtctgtaggctgctccctatggaatcatttgggctcagtggt 563
Query: 364 gatcctccatattgtttttaatgacaggcatttagaagaaa-gatgacacagtaatgttt 422
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 gatcctccatattgtttttaatgacaggcatttagaagaaaagatgacacagtaatgttt 623
Query: 423 ttctctagcagaagaaagcgggaactgaagaaaagagcagaagaaaagtatgagctgaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctctagcagaagaaagcgggaactgaagaaaagagcagaagaaaagtatgagctgaat 683
Query: 483 ggtagctcatagtaataatggggagaagaagagccacacggatttagcattttcattttg 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 ggtagctcatagtaataatggggagaagaagagccgcacggatttagcattttcattttg 743
Query: 543 tgaagtagaaaacaggcttttaaaatggatattactagatgaactcactcaggttttcta 602
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 744 tgaagtagaaaacaggcttttaaaatggatattactagatgaacccactcaggttttcca 803
Query: 603 tatgtggttatgtttcacacagtttcagcgaaaccgaaggccacatagcatgatgactat 662
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 804 tatgtggttatgtttcacacagtttcagcgaagccgaagaccacatagcatgatgactat 863
Query: 663 agttaatactattgtatt 680
||||||||||||||||||
Sbjct: 864 agttaatactattgtatt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_i13.g1 MSMg01no527_i13.g1 CHROMAT_FILE:
MSMg01no527_i13.g1 PHD_FILE: MSMg01no527_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:48 2005
(620 letters)
>mm_chr3_137932294_137933312
Length = 1019
Score = 1081 bits (559), Expect = 0.0
Identities = 577/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Minus
Query: 1 caactgacccagaggtaaataacaataaaactcaaatccaaatctagctgaaatactgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 582 caactgacccagaggtaaataacaataaaactcaaatccaaatctagctgaaacactgac 523
Query: 61 aaaattcatgcaattcccaacagtatgagagaaaagacacccatttcctgacataactaa 120
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 522 aaaattcatgcaattcccaacagtataagagaaaagacactcatttcctgacataactaa 463
Query: 121 tatataactcaatttttttggtgttctaatcagattcctggcatctaataaaaattaaga 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatataactc-atttttttggtgttctaatcagattcctggcatctaataaaaattaaga 404
Query: 181 caaagatatgaaagtattatcattacagcctaggtaaaatgttaaggcctagatggaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caaagatatgaaagtattatcattacagcctaggtaaaatgttaaggcctagatggaata 344
Query: 241 ttaaggcatatgtaaaatgttaaggcctggctaacagttatctggctagcctgccattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttaaggcatatgtaaaatgttaaggcctggctaacagttatctggctagcctgccattat 284
Query: 301 aaagaaacttttccatatgtttctgctgtaggaaactttctaatgccaagactggttaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaagaaacttttccatatgtttctgctgtaggaaactttctaatgccaagactggttaca 224
Query: 361 tattctgttacgttctgtgccaatcatgatagaagggaatagaactgttttgtatagtta 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 223 tattctgttacgttctgtgccaatcatgatagaagggaatagaactattttgtatagtta 164
Query: 421 aacacaataatcttaggcctgaacctaccatccaacagaacttcctgtacctgtatataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aacacaataatcttaggcctgaacctaccatccaacagaacttcctgtacctgtatataa 104
Query: 481 gcttttatggtataaactgcctctgggatagaccccaaaataagagagacacctgcacca 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 103 gcttttatggtataaactgcctctgggacagaccccaaaataagagagacacctgcacca 44
Query: 541 atataagaaactacttggaataagtcttccattttgagtaaca 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 atataagaaactacttggaataagtcttccattttgagtaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
