BAC Information

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BAC

Clone NameMSMg01-527O10
Chromosome3 (Build37)
Map Location 131,228,699 - 131,229,340
singlet/doubletsinglet
Overlap genePapss1
Upstream geneCol25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443
Downstream geneOlfr375-ps1, Dkk2, LOC100039018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527O10.T7 (MSMg01no527_o10.b1)MSMg01-527O10.TJ (MSMg01no527_o10.g1)
ACCAG597145AG597146
length735735
length of high quality
(start - end)
645 (54 - 698)652 (84 - 735)
definitionCHROMAT_FILE: MSMg01no527_o10.b1 PHD_FILE: MSMg01no527_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:20 2005CHROMAT_FILE: MSMg01no527_o10.g1 PHD_FILE: MSMg01no527_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACTGTCTTCTTTCATCCTTTACCTTAACTTCTTAG
AAGGTGAGAGGGATGTGAGATAAAAGGGAGATTAGGAGGTTGGAAGGGAC
AGACTCCTGGCGTGGGCTCCAGTCCCCCGCCTTGCTGTTGGTGAGTTGGG
TGATCTTGAGGACAGTCACTCCACTCTGAATCCCAGGTGACTGGAGGGTG
TAACAGTGTGTCCTTCTCAGGATTGTCTTTCTGAGTAGAGAAGATAACGA
AGGTGAAAGAGCAACGAAACCATTGCTCTGAAACTCCGATTCAGCATCAC
TATTGTTGCTAACAGGATTTTACGGATAGGGAGGTAAGTTGACTAAATTG
GAGTATTTCAAAGAAGTTTCAGTAATACTGTCTGTCTATAAGTCACTTAT
TTAAAGATCATTTTGTTATTTTTTGAGTCTGAGTGTTTTCCCTGTGTGTA
TGTGTATGCACCAGGTGCGCGCCTGATGTTCCAGAAGGGTGTGTAGGATC
CCCTTCGGGCTGCAGTTACAGGTAGTTGTGAGCCACCATTGTGTGTGTTC
TGGGGATCCTCTGTAAGAGCGAGTGCTCTAAACTGCTGAGCCAACTCTTC
TGCTGCCCTAATTCATTTATGTATTACATTGTTTGCTATGTAGAGATCCA
TACCTGACAGCTATAAAAAACCATAGGGCTCATGG
NNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACAGAGGAATCTCA
AATGTCTGAGAAACACCTAAAGAAATGTTCAAAGCCCTTAGTGATCAGAG
AAATGCAAATCAAATCGACCCTGAGATTCCACCTCACACCAGTCAAAATG
GCTAAGATAAAAAATTCAAATAACAACAGATGTTGGCAAGGATGTGGAGA
GTGGAGCACTCCTCCACTGCTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAATGTGGAGGTTCCTCAGAAAATTGGAAATAGATCTACCTGA
AGGTCCAGCAATACCACTCTTTGGAATATACGCAAAAGATGCCCCATCAT
GCCACAGGGTACATGTTCCACTATGTTCATAGGGGCCTTGTTTGTGATAG
TCAGAAGCTGGAAACAACCCAGATTTCCCATGACAGAAGAATGGATACAG
AAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAATGA
GGACAAACCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATTATC
CTGAGTGAGGTAACTCAGATCCAAAAGGACATGCATGGTATGTACTCGCT
AATAAGTGGATATTAGAAAGACAGAAAAAGTGCTGAATACCCAAGATACA
GCCCACAGAGCTCANAAAGGTCAACAAGCTGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_o10.b1 MSMg01no527_o10.b1 CHROMAT_FILE:
MSMg01no527_o10.b1 PHD_FILE: MSMg01no527_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:20 2005
         (645 letters)



>mm_chr3_131228495_131229539
          Length = 1045

 Score = 1180 bits (610), Expect = 0.0
 Identities = 634/642 (98%), Gaps = 1/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcactgtcttctttcatcctttaccttaacttcttagaaggtgagagggatgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactgtcttctttcatcctttaccttaacttcttagaaggtgagagggatgtg 264

                                                                       
Query: 65  agataaaagggagattaggaggttggaagggacagactcctggcgtgggctccagtcccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agataaaagggagattaggaggttggaagggacagactcctggcgtgggctccagtcccc 324

                                                                       
Query: 125 cgccttgctgttggtgagttgggtgatcttgaggacagtcactccactctgaatcccagg 184
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 cgccttgctgtttgtaagttgggtgatcttgaggacagtcactccactctgaatctcagg 384

                                                                       
Query: 185 tgactggagggtgtaacagtgtgtccttctcaggattgtctttctgagtagagaagataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgactggagggtgtaacagtgtgtccttctcaggattgtctttctgagtagagaagataa 444

                                                                       
Query: 245 cgaaggtgaaagagcaacgaaaccattgctctgaaactccgattcagcatcactattgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgaaggtgaaagagcaacgaaaccattgctctgaaactccgattcagcatcactattgtt 504

                                                                       
Query: 305 gctaacaggattttacggatagggaggtaagttgactaaattggagtatttcaaagaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctaacaggattttacggatagggaggtaagttgactaaattggagtatttcaaagaagt 564

                                                                       
Query: 365 ttcagtaatactgtctgtctataagtcacttatttaaagatcattttgttattttttgag 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 ttcagtaatactgtctgtctataagtcatttatttaaagatcattttgttattttttgag 624

                                                                       
Query: 425 tctgagtgttttccctgtgtgtatgtgtatgcaccaggtgcgcgcctgatgttccagaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgagtgttttccctgtgtgtatgtgtatgcaccaggtgcgcgcctgatgttccagaag 684

                                                                       
Query: 485 ggtgtgtaggatccccttcgggctgcagttacaggtagttgtgagccaccattgtgtgtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggtgtgtaggatccccttcgggctgcagttacaggtagttgtgagccaccattgtgtgtg 744

                                                                       
Query: 545 ttctggggatcctctgtaagagcgagtgctctaaactgctgagccaactcttctgctgcc 604
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 745 ttctggggatcctctgtaagagcgagtgctgtcaactgctgagccaactcttctgctgcc 804

                                                     
Query: 605 ctaattcatttatgtattacattgtttgcta-tgtagagatc 645
           ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 805 ctaattcatttatgtattacattatttgctaatgtagagatc 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)