Query= MSMg01no528_c18.b1 MSMg01no528_c18.b1 CHROMAT_FILE:
MSMg01no528_c18.b1 PHD_FILE: MSMg01no528_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:42 2005
(698 letters)
>mm_chr3_130324263_130325355
Length = 1093
Score = 1249 bits (646), Expect = 0.0
Identities = 680/694 (97%), Gaps = 6/694 (0%)
Strand = Plus / Plus
Query: 5 gaattctagactaccacagagagatgaattccaaacatcactgtccttagagaatgtatg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagactaccaaagagagatgaattccaaacatcactgtccttagagaatgtatg 264
Query: 65 tgatgctgcatacccactgcaaaaaaaaaaaaaaaaaaagtatcaaagtcattacaggtg 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 tgatgctgcatacccactgcaaaaaaaaaaaaaa-----gtatcaaagtcattacaggtg 319
Query: 125 tcnttgtctaaatcctgactcttcctccattgatgagaaatctcattctggttatttgac 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tc-ttgtctaaatcctgactcttcctccattgatgagaaatctcattctggttatttgac 378
Query: 185 ctctctgaggctgttgccccacccataggaaaggagatggcaacactcgccttgcaacat 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 379 ctctctgaggctgttgccccacccataggaaaggagatggcaacattcgccttgcaacat 438
Query: 245 catcgtgagaataaatagaagcaaacccactgccacaagcgtcctctgaatgactgtttc 304
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 439 catcgtgagaataaatagaagcaaacacactgccacaagcatcctctgaatgactgtttc 498
Query: 305 ctttctccacttaaggagagtttatttagactctgaactaggcagaaaagcagatgatct 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ctttctccacttaaggagagtttatttagactctgaactaggcagaaaaacagatgatct 558
Query: 365 taatcttacagataaggaaaccaaccaagcactgagccaatgcaccttggttggacatcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taatcttacagataaggaaaccaaccaagcactgagccaatgcaccttggttggacatcc 618
Query: 425 aggctcaagggtgctccatccctccagagacagggcttacggtgggattcttagtgtact 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 aggctcaagggtgctccatccctccagagacagggcttatggtgggattcttagtgtact 678
Query: 485 taaagctagtcatccctgatgcgactgggctgggtgaactggggagcatagctgccattc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taaagctagtcatccctgatgcgactgggctgggtgaactggggagcatagctgccattc 738
Query: 545 tttaggtttctgttatgtgtcttattccttaatggctgttacatatgtgttaccaagtta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttaggtttctgttatgtgtcttattccttaatggctgttacatatgtgttaccaagtta 798
Query: 605 cagggagaacttcagtggggcaggatggagagagaaagcagcctccattccacattatac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cagggagaacttcagtggggcaggatggagagagaaagcagcctccattccacattatac 858
Query: 665 attcctgaataaatgccagtttccaacttctgta 698
|||||||||||||||||||||||| | |||||||
Sbjct: 859 attcctgaataaatgccagtttccgatttctgta 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1093
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1083
Effective search space: 745104
Effective search space used: 745104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_c18.g1 MSMg01no528_c18.g1 CHROMAT_FILE:
MSMg01no528_c18.g1 PHD_FILE: MSMg01no528_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:42 2005
(585 letters)
>mm_chr3_130494096_130495080
Length = 985
Score = 907 bits (469), Expect = 0.0
Identities = 490/497 (98%)
Strand = Plus / Minus
Query: 89 atcctctcccacagtgtgagtactggaatacaagttgaacaccccccctcaaaaaagata 148
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 985 atcctctcctacagtgtgagtactggaatacaagttgaacaccctccctcaaaaaagata 926
Query: 149 agaaccaggtggtggtggtccacatctttgatgcccacacttgggaggcagaggcaggca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 agaaccaggtggtggtggtccacatctttgatgcccacacttgggaggcagaggcaggca 866
Query: 209 gatctctctgtgactttgaggccaccatggtttatagagctagtttctggacagccaagg 268
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 865 gatctctctgtgactttgaggccagcatggtttatagagctagtttctagacagccaagg 806
Query: 269 ttacacaaagaaaccctgtcttaaaagaaaacgaattaaattaaataaataatgaaataa 328
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 805 ttacacaaagaaaccctgtcttaaaagaaaatgaattaaattaaataaataatgaaataa 746
Query: 329 ataaatatgtattaaatattaagtaactataataaaaggatacatcaaaggacattccaa 388
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 745 ataaatatgtattaaatattatgtaactataataaaaggatacatcaaagggcattccaa 686
Query: 389 cttactgcttctctagtgagctcgaattcccacgtggcatactgatggaaaattaacaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttactgcttctctagtgagctcgaattcccacgtggcatactgatggaaaattaacaaa 626
Query: 449 tatggtattttgaagatgggtcatgtactttagaaagtccaagtgggggctggagagatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatggtattttgaagatgggtcatgtactttagaaagtccaagtgggggctggagagatg 566
Query: 509 gctcagtggttaagagcactgactgctcttccaaaggccctgagttcaaatccaatcaac 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctcagtggttaagagcactgactgctcttccaaaggccctgagttcaaatccaatcaac 506
Query: 569 cacatggtggctcacaa 585
|||||||||||||||||
Sbjct: 505 cacatggtggctcacaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
