Query= MSMg01no528_e05.b1 MSMg01no528_e05.b1 CHROMAT_FILE:
MSMg01no528_e05.b1 PHD_FILE: MSMg01no528_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:49 2005
(690 letters)
>mm_chr3_128567640_128568727
Length = 1088
Score = 1286 bits (665), Expect = 0.0
Identities = 681/687 (99%), Gaps = 2/687 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacaagcatctaagtgcctgtgctaaatatacagtttgcttctgtaggcacaga 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcacaagcatctaagtgcctgtgctaaatatacagtttgtttctgtaggcacaga 263
Query: 64 gaaggctgtaaaaatagtggaaggctgtttgactgggcacagccccattcttcagccttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaggctgtaaaaatagtggaaggctgtttgactgggcacagccccattcttcagccttt 323
Query: 124 cactttccaaaacatgcccgactagagaacagtttaacacaaggatttccggaccccact 183
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 cactttccaaaacatgcccgactagagaacagtttaaca--aggatttccggaccccact 381
Query: 184 cccacactgcccaattgaggcagatctatgaaagataccagccatcttcacgtgtctcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccacactgcccaattgaggcagatctatgaaagataccagccatcttcacgtgtctcct 441
Query: 244 ccatctcaagtaattccagtgcagaccgttttttgctcttgaacgatctgatatcaaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccatctcaagtaattccagtgcagaccgttttttgctcttgaacgatctgatatcaaaga 501
Query: 304 acagaaaagaacagagaaagccagaccaccttctcccactactgagcctcttacccctag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acagaaaagaacagagaaagccagaccaccttctcccactactgagcctcttacccctag 561
Query: 364 gataggttccgttctgatattaagaggagccatcagagaggagcaaagcagacttgagtg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtaggttccgttctgatattaagaggagccatcagagaggagcaaagcagacttgagtg 621
Query: 424 gcaggatctacagattaataatcagcattttcagaaaaaaaggagaaagtaggacacact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcaggatctacagattaataatcagcattttcagaaaaaaaggagaaagtaggacacact 681
Query: 484 agctttagggagaccagtgactaagtcgttgctgtgcaggtacgagaacatgagaatgga 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 682 agctttagggagaccagtgactaagtcgttgctgtgcaggtacgaggacatgagaatgga 741
Query: 544 tctttagcactcgtgcaaaaagctgggaatgtctatgcacacaaacatatggaggtagag 603
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 742 tctttagcactcgtgcaaaaagctgggaatgtctatgcacacaaacacatggaggtagag 801
Query: 604 acaaaaggagcctttgaaactcaatggtcagctacttgtgccaattggtgagttccagat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acaaaaggagcctttgaaactcaatggtcagctacttgtgccaattggtgagttccagat 861
Query: 664 tcaatgataggtgctgttttaagatat 690
|||||||||||||||||||||||||||
Sbjct: 862 tcaatgataggtgctgttttaagatat 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1088
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1078
Effective search space: 733040
Effective search space used: 733040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_e05.g1 MSMg01no528_e05.g1 CHROMAT_FILE:
MSMg01no528_e05.g1 PHD_FILE: MSMg01no528_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:49 2005
(638 letters)
>mm_chr3_128645505_128646542
Length = 1038
Score = 1123 bits (581), Expect = 0.0
Identities = 587/589 (99%)
Strand = Plus / Minus
Query: 50 taatagttgtgcttgtaagagataatgtgagattttcagatactttacatggatttactc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 taatagttgtgcttgtaagagataatgtgagattttcagatactttacatggatttactc 979
Query: 110 actaaaccttcacagcaaacttatttacctcaggagccactgagaggcaagtgtttggcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 actaaaccttcacagcaaacttatttacctcaggagccactgagaggcaagtgtttggcc 919
Query: 170 cgaacactcagagtctagaaataatactggattcaaagggaggagctagctccagagttc 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 918 cgaacactcagagtctagaaataatactggattcaaagggaggagctagctccagagtcc 859
Query: 230 atgctttaaacacaatgttaaaggaaataaggttgaagaaaattctgtatttcaggggcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 atgctttaaacacaatgttaaaggaaataaggttgaagaaaattctgtatttcaggggcc 799
Query: 290 aaagatatatcacttcttggattgttatagtggaccttgcatgcccttcagttgatgaca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaagatatatcacttcttggattgttatagtggaccttgcatgcccttcagttgatgaca 739
Query: 350 gagactgaatacctacattgtcttagcagcctggtagggcagcctagtctttagacttcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagactgaatacctacattgtcttagcagcctggtagggcagcctagtctttagacttcc 679
Query: 410 cctggcactaagcactggattcagttccaaacaggcacatggtgattgaataacatttgg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctggcactaagcactggattcagttccaaacaggcacatggtgattgaataacatttgg 619
Query: 470 aggtttaggtagagtgtctttgggtctacactggtccgtcagtacattgcaacattgcac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggtttaggtagagtgtctttgggtctacactggtccgtcagtacattgcaacattgcac 559
Query: 530 ttgacactagttatgaacttaaaataattctccataaacttgaaaagcacatatgcacaa 589
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgacactagttatgaacttaaagtaattctccataaacttgaaaagcacatatgcacaa 499
Query: 590 ctgcttaaacctttctcttcaatgaaactcataaaagggagaaaccaac 638
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgcttaaacctttctcttcaatgaaactcataaaagggagaaaccaac 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
