BAC Information

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BAC

Clone NameMSMg01-528J18
Chromosome3 (Build37)
Map Location 153,008,278 - 153,131,463
singlet/doubletdoublet
Overlap geneSt6galnac3
Upstream geneUsp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528J18.T7 (MSMg01no528_j18.b1)MSMg01-528J18.TJ (MSMg01no528_j18.g1)
ACCAG597685AG597686
length758749
length of high quality
(start - end)		701 (44 - 744)613 (74 - 686)
definitionCHROMAT_FILE: MSMg01no528_j18.b1 PHD_FILE: MSMg01no528_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:15 2005CHROMAT_FILE: MSMg01no528_j18.g1 PHD_FILE: MSMg01no528_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,008,278 - 153,008,971)(153,131,003 - 153,131,463)
sequence
NTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCG
GAATTCTGATGAAATACGATTATTGAAGTCCTAAATGCAGGTTATATTTA
ATTCTGCACATGGTACATTTGGGATACTGCTAAGTAATAGCTCTTACAAG
ATCTCCATTTGAAAGAAAAGTAAGAATGCGAAGCCCAACCAATGGAAGAC
AAGAAATGTTAAAGTCTAAAAGTAGACATCTAAAAAGACCTTGGAAGGTC
CTACCAATCAACACTGCTGGAGATACTGTCCCGTGAGATGCTGCCCACAC
AGGGGCCAAGTCTTTAATCTCATTAACCATGAAGCCAGAGTCCAAGTCAG
GGCTCGTGTAAACCTGAGGCTTTCCTTCAGACAGCGACTTCCCCCAGTAC
TGTCCCAGTTCTCATTCACCAGGAAATCCAGAATGCCCATTAACCTATTT
GTTTATTAGCCTAAGTCTATTCCCTTGACGTGTGTAAGACAGACCACTAC
ACAACTCTAAAAACAACCAATGCTAGAAACTGATACTATATCAAGACGCC
AGACTGGGAAATTATTAACCCCACCCCAGAAAGCTCACAGGGACCCCACT
GGAGTGACTACTGATTCTGCTATGCTATGGAGAAGAAGGGTGTGAAGGTT
CTACGTCATGACTTCTGGGTCAGAACTTCACTCTGTATTACAAAAGGAAC
CGAGCAAATTATTTACCTTCTGCAAATCACTATTTTGACATGGGAATTGG
ATAATAAC

ACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTGAAAACTCTGGAAATTCATTATC
ATTTGTCTTAGTTTCTATTGCTGAACTAAAACATCACGCCCAAAGCAAAG
AGAGGTAAGGGGGTGGGGCGGGGGAGATGGCTTACTTTTTACTACTCTCA
GGCTGTGGAGGAGTGATGCCTGCTGGCTTGTTCTTCATGGCTTGTTCATT
TTGCTTTCTTACAGTCCGAGACGGCCTGCCCAAGGGTGGCAGCGGGCTGA
GTTCTCACATACCCATCATTAGTCAAGAAAATGCCCTAACGCCTGACCAC
AGGTCAGTTTGATGAAGGCATTTTCTCAGTTGAGGGTCCTCTTCCCAGAT
GTCCCCAGCTGTATCAAGTTAACATCATTTATAGCTACTTATTCTAGATT
GTTATTTCCTGAGGAAACTGGTAGCAAAGATTCCTTTAAACAGATAAAAA
ATAATTAAAAGGTGTTGAAAACAACCATTTACAGTTCTAACAACAGATGC
TGAGTGTGTTTGGCAAATGGGTTAAACAAACCACAGGAAATGGATGGTTA
GTGATTACTACAGAGTTAAGGAGAGCTGGGAACAACAGCCTGTCCCTTTA
AGAACTCTGAGCTTAGATTCCTCGCTGGACATGTTGAGGGTAAAGTGCAC
AGTTTTGCTTTTACAGTGCCACAAGTGTTGCTTCCTGTGATGGCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_j18.b1 MSMg01no528_j18.b1 CHROMAT_FILE:
MSMg01no528_j18.b1 PHD_FILE: MSMg01no528_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:15 2005
         (701 letters)



>mm_chr3_153008071_153009171
          Length = 1101

 Score = 1295 bits (670), Expect = 0.0
 Identities = 688/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctgatgaaatacgattattgaagtcctaaatgcaggttatatttaattctgcaca 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctgatgaaatacgattattgaagtcctaaatgcaggttatatttaattctgcaca 267

                                                                       
Query: 68  tggtacatttgggatactgctaagtaatagctcttacaagatctccatttgaaagaaaag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggtacatttgggatactgctaagtaatagctcttacaagatctccatttgaaagaaaag 327

                                                                       
Query: 128 taagaatgcgaagcccaaccaatggaagacaagaaatgttaaagtctaaaagtagacatc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 328 taagaatgcgaagcccaaccaatggaagacaagaaatgttaaagtctaaaaatagacatc 387

                                                                       
Query: 188 taaaaagaccttggaaggtcctaccaatcaacactgctggagatactgtcccgtgagatg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaaaagaccttggaaggtcctaccaatcaacactgctggagatactgtcccgtgagatg 447

                                                                       
Query: 248 ctgcccacacaggggccaagtctttaatctcattaaccatgaagccagagtccaagtcag 307
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttcccacgcaggggccaagtctttaatctcattaaccatgaagccagagtccaagtcag 507

                                                                       
Query: 308 ggctcgtgtaaacctgaggctttccttcagacagcgacttcccccagtactgtcccagtt 367
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggctcttgtaaacctgaggctttccttcagacagcgacttcccccagtactgtcccagtt 567

                                                                       
Query: 368 ctcattcaccaggaaatccagaatgcccattaacctatttgtttattagcctaagtctat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctcattcaccaggaaatccagaatgcccattaacctatttgtttattagcctaagtctat 627

                                                                       
Query: 428 tcccttgacgtgtgtaagacagaccactacacaactctaaaaacaaccaatgctagaaac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tcccttgacgtgtgtaagacagaccactacacaactctaaaaacaaccaatgctagaaac 687

                                                                       
Query: 488 tgatactatatcaagacgccagactgggaaattattaaccccaccccagaaagctcacag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgatactatatcaagacgccagactgggaaattattaaccccaccccagaaagctcacag 747

                                                                       
Query: 548 ggaccccactggagtgactactgattctgctatgctatggagaagaagggtgtgaaggtt 607
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 748 ggaccccactagagtgactactgattctgctatgctatggagaagaagggtttgaaggtt 807

                                                                       
Query: 608 ctacgtcatgacttctgggtcagaacttcactctgtattacaaaaggaaccgagcaaatt 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctacgtcatgacttctgggtcagaacttcactctgtattacaaaaggaaccgagcaaatt 867

                                             
Query: 668 atttaccttctgcaaatcactattttgacatggg 701
           ||||||||||||||||||||||||||||||||||
Sbjct: 868 atttaccttctgcaaatcactattttgacatggg 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_j18.g1 MSMg01no528_j18.g1 CHROMAT_FILE:
MSMg01no528_j18.g1 PHD_FILE: MSMg01no528_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:15 2005
         (613 letters)



>mm_chr3_153130451_153131463
          Length = 1013

 Score =  814 bits (421), Expect = 0.0
 Identities = 451/461 (97%)
 Strand = Plus / Minus

                                                                        
Query: 153  gcttgttcttcatggcttgttcattttgctttcttacagtccgagacggcctgcccaagg 212
            |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 1013 gcttgttcttcatggcttgttcattttgctttcttacagtccgagaccacctgcccaagg 954

                                                                        
Query: 213  gtggcagcgggctgagttctcacatacccatcattagtcaagaaaatgccctaacgcctg 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  gtggcagcgggctgagttctcacatacccatcattagtcaagaaaatgccctaacgcctg 894

                                                                        
Query: 273  accacaggtcagtttgatgaaggcattttctcagttgagggtcctcttcccagatgtccc 332
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 893  accacaggtcagtttgatgaaggcattttctcagttgaggtttctcttcccagatgtccc 834

                                                                        
Query: 333  cagctgtatcaagttaacatcatttatagctacttattctagattgttatttcctgagga 392
            ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 833  cagctgtatcaagttaacatcatttatagctccttatcctagattgttatttcctgagga 774

                                                                        
Query: 393  aactggtagcaaagattcctttaaacagataaaaaataattaaaaggtgttgaaaacaac 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  aactggtagcaaagattcctttaaacagataaaaaataattaaaaggtgttgaaaacaac 714

                                                                        
Query: 453  catttacagttctaacaacagatgctgagtgtgtttggcaaatgggttaaacaaaccaca 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  catttacagttctaacaacagatgctgagtgtgtttggcaaatgggttaaacaaaccaca 654

                                                                        
Query: 513  ggaaatggatggttagtgattactacagagttaaggagagctgggaacaacagcctgtcc 572
            | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 653  gaaaatggatggttagtgattactacagagttaaggagagctgggaacgacagcctgtcc 594

                                                     
Query: 573  ctttaagaactctgagcttagattcctcgctggacatgttg 613
            |||||||||||||||| |||||||||| |||||||||||||
Sbjct: 593  ctttaagaactctgagattagattccttgctggacatgttg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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