Query= MSMg01no528_l07.b1 MSMg01no528_l07.b1 CHROMAT_FILE:
MSMg01no528_l07.b1 PHD_FILE: MSMg01no528_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
(628 letters)
>mm_chr3_51209621_51210649
Length = 1029
Score = 1170 bits (605), Expect = 0.0
Identities = 621/629 (98%), Gaps = 5/629 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaaaactctggaagtggacagaggattcccaggataagatggctaatcatatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggaattccaaaactctggaagtggacagaggattcccaggataagatggctaatcatatt 570
Query: 64 agccactggggagctctggggccaatcaagaaaccctgcctcaatgaataaggggaaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agccactggggagctctggggccaatcaagaaaccctgcctcaatgaataaggggaaaag 510
Query: 124 ccattgatagacacccccagcatccgcctggggccttcctgttgctgtgcacacatgcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccattgatagacacccccagcatccgcctggggccttcctgttgctgtgcacacatgcag 450
Query: 184 acatgcacatgcaccacacacaaaatatgtcagtttccataggttacactgataaaaata 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 449 acatgcacatgcaccacacacaaaatatgtcagtttccatgggttacactgataaaaata 390
Query: 244 ccttgtatctgctagataataaacacagtaatcacaacacacattttctttatttaagaa 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 389 ccttgtatctgctagataataaacatagtaatcacaacacacattttctttatctaagaa 330
Query: 304 ctctgaaatttaacactttagaatttattgtccaagtcttctgctgcttttttataccac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctctgaaatttaacactttagaatttattgtccaagtcttctgctgcttttttataccac 270
Query: 364 tttgcccatttcagtacttatgctatggatctaaaattaagtactgagggtttgtttttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttgcccatttcagtacttatgctatggatctaaaattaagtactgagggtttgtttttt 210
Query: 424 g-----ttttttttttttttttgagacagggtttctctgtgtagccctggctgtcctgga 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggttttttttttttttttttttgagacagggtttctctgtgtagccctggctgtcctgga 150
Query: 479 actcactttgtagaccaggctggtctcgaactcagaaatccgcctgcctctgcctcccga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 actcactttgtagaccaggctggtctcgaactcagaaatccgcctgcctctgcctcccga 90
Query: 539 gtgctgggattaaaggtgtgcgccaccaagcccggctctgatattatttaatagatatat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gtgctgggattaaaggtgtgcgccaccaagcccggctctgatattatttaatagatatat 30
Query: 599 tttctagattttttttctgatgctttaag 627
|||||||||||||||||||||||||||||
Sbjct: 29 tttctagattttttttctgatgctttaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_l07.g1 MSMg01no528_l07.g1 CHROMAT_FILE:
MSMg01no528_l07.g1 PHD_FILE: MSMg01no528_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
(644 letters)
>mm_chr3_51001253_51002296
Length = 1044
Score = 1195 bits (618), Expect = 0.0
Identities = 639/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 1 ccccctgcatttctgactggtcatctcctggggaattctctgtaactggaaatgatcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccctgcatttctgactggtcatctcctggggaattctctgtaactggaaatgatcccg 260
Query: 61 gaaaaccaggaacagctgcattgtaggtactgatggcctctacagtccccagctgcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaccaggaacagctgcattgtaggtactgatggcctctacagtccccagctgcaccc 320
Query: 121 agccctccaccgggccaccagggggtcccagaggggaggctggtccaaggcaaacatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctccaccgggccaccagggggtcccagaggggaggctggtccaaggcaaacatcat 380
Query: 181 ggggccctggcttccattttcagagggactgtgttaatcaccagtaaagcacactgcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggccctggcttccattttcagagggactgtgttaatcaccagtaaagcacactgcgtt 440
Query: 241 ttttacagaaaggatattactgaaaacaattagtcttgattttttttttcttttttgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttacagaaaggatattactgaaaacaattagtcttgattttttttttcttttttgctg 500
Query: 301 cttctaaccaatagccaaaaggttgacaaccaatttaaacatacccacttcactgggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctaaccaatagccaaaaggttgacaaccaatttaaacatacccacttcactgggaaa 560
Query: 361 atacccaaaggcacctgtataga-ttctggatctcagtgggtcagaacatgaactgcacc 419
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 561 atacccaaaggcacctgtatagagtt-tggatgtcagtgggtcagaacatgaactgcacc 619
Query: 420 tccagagaaccc-agcttgctagcagcgcccgcaaaggatgccccataagggcctataac 478
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccaga-aaccccagcttgctagcagcgcccgcaaaggatgccccataagggcctataac 678
Query: 479 tccatgggagccaacacctctgggttctgtgagcacttgtattcatacttaaaataagta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 tccatgggagccaacacctctgggttctgtgagcacttgtattcatacttaaaataaata 738
Query: 539 aatacatctttggaataaaggcttagtaactccacacacaaagcctggcctggtatgctt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 739 aatacatctttggaataaaggcttagtaactccacacacaaagcctggcctggtatgttt 798
Query: 599 cctgaaatatgctccgacgagacagaggctccatagtcttttctca 644
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cctgaaatatgctccgacgagacagaggctccatagtcttttctca 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
