Query= MSMg01no528_n10.b1 MSMg01no528_n10.b1 CHROMAT_FILE:
MSMg01no528_n10.b1 PHD_FILE: MSMg01no528_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:33 2005
(701 letters)
>mm_chr3_83754925_83756024
Length = 1100
Score = 1023 bits (529), Expect = 0.0
Identities = 551/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaatagagaaataatcttaaggaattataagctgtttatgaaattatggccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattcattaatagagaaataatcttaaggaattataagctgtttatgaaattatggccc 498
Query: 65 tcagattttt-aaacttctttcaaatagttattgtgttagaatactgtagaaggtcttct 123
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcagttttttaaaacttctttcaaatagttattgtgttagaatactgtagaaggtcttct 438
Query: 124 gttagaagtcttaaagctgccttgttgacactctgttttctgaccagttctgaaccctgc 183
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 gttagaagtcttaaagctgccttgttgaca--ctgttttctgaccagttctgaaccctgc 380
Query: 184 tgtatgtggagaatcaggccttagaaagctaagcatatttgggccaggcatgttggagga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtatgtggagaatcaggccttagaaagctaagcatatttgggccaggcatgttggagga 320
Query: 244 tgactttatcccagcacccagaaagcagaactctgagttctggccagaccctacctcaga 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgcctttatcccagcacccagaaagcagaactctgagttctggccagaccctacctcaga 260
Query: 304 aatggtgggggtgggagggtagacagcatttcagctctacagagcccaaggttaagagtt 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatggtgggggtgggagggtggacagcatttcagctctacagagcccaaggttaagagtt 200
Query: 364 tgaggccaacctgtgctgcacagtgaacctcttgtctcaaacaatcaaacaaaaacaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgaggccaacctgtgctgcacagtgaacctcttgtctcaaacaatcaaacaaaaacaaaa 140
Query: 424 gaagaaagttgaacaaagaattaaaaattagagaaataaaaggacatcttagcctatttg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 139 gaagaaagttgaacaaagaattaaaaattagagaaataaaaggacatcttagactatttg 80
Query: 484 tatgacggaggcatgttctcctttatctcggattagttactatctctctgttaggttagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tatgacggaggcatgttctcctttatctcggattagttactatctctctgttaggttagg 20
Query: 544 acacccgcgggagtggagg 562
||||||| |||||||||||
Sbjct: 19 acacccgggggagtggagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1100
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1090
Effective search space: 753190
Effective search space used: 753190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_n10.g1 MSMg01no528_n10.g1 CHROMAT_FILE:
MSMg01no528_n10.g1 PHD_FILE: MSMg01no528_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:33 2005
(655 letters)
>mm_chr3_83580538_83581592
Length = 1055
Score = 1137 bits (588), Expect = 0.0
Identities = 636/660 (96%), Gaps = 14/660 (2%)
Strand = Plus / Plus
Query: 1 agtctcagctacacagcaagtccaaagtcaacctgcgctaccatagagcatgtcaaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctcagctacacagcaagtccaaagtcaacctgcgctaccatagagcatgtcaaagtc 260
Query: 61 aacaagcgaacacacttgaaaaaaagaaatctacttgaatgttctctctgcaagcaagcc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaagcgaacacacttgaaagaaagaaatctacttgaatgttctctctgcaagcaagcc 320
Query: 121 agaggttagcaaacaagccagaggttacatgtttatataacgggatgcacgaccttgggc 180
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct: 321 agaggttagcaaacaagccagagattacatgtttatataacgggatgcatgactttgggc 380
Query: 181 tctagagactacgctgaggccagacagggcttctgtcagtcactgtggctcatgctctga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagagactacgctgaggccagacagggcttctgtcagtcactgtggctcatgctctg- 439
Query: 241 agaaggagt-----tcttgccatgtgcgccttctggtggactttccagctctggccacta 295
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 --------tctccttcttgccatgtgcgccttctggtggactttccagctctggccacta 491
Query: 296 cttatcctgttcccatctttgatgtaggcacaagccataaagtgggccccgagtagggca 355
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 492 cttatcctgttcccatctttgatgtaggcagaagccataaagtgggccccgagtagggca 551
Query: 356 ggtaggtctgtgctcaaccttgtttattcttgtttgtttattgctatgttggtaacagta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggtaggtctgtgctcaaccttgtttattcttgtttgtttattgctatgttggtaacagta 611
Query: 416 gtcttaataacttcgtcagttactaggtttcttttgtaggcagatggagccgtaaatgta 475
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 612 gtcttaattacttcttcagttactaggtttcttttgtaggcagatggagctgtgaatgta 671
Query: 476 cacccatgaatggaaacagggagagctttggacttctgagttcctagaaatggtttgtga 535
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cacccacgaatggaaacagggagagctttggacttctgagttcctagaaatggtttgtga 731
Query: 536 ctcctggagaagctcaaacacttaaagtaggagagttccctaaacagaaaagctaaagga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctcctggagaagctcaaacacttaaagtaggagagttccctaaacagaaaagctaaagga 791
Query: 596 tattaaaattatatatccccaggcagctcattcctcatccctttagtaaatagctcaaga 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tattaaaattatatatccccaggcagctcattcctcatccctttagtaaatagctcaaga 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
