BAC Information

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BAC

Clone NameMSMg01-529B09
Chromosome3 (Build37)
Map Location 85,395,917 - 85,534,582
singlet/doubletdoublet
Overlap genePet112l, 9930021J17Rik
Upstream geneTigd4, Tmem154, LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125
Downstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529B09.T7 (MSMg01no529_b09.b1)MSMg01-529B09.TJ (MSMg01no529_b09.g1)
ACCAG598049AG598050
length764754
length of high quality
(start - end)		679 (51 - 729)624 (79 - 702)
definitionCHROMAT_FILE: MSMg01no529_b09.b1 PHD_FILE: MSMg01no529_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:54 2005CHROMAT_FILE: MSMg01no529_b09.g1 PHD_FILE: MSMg01no529_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,395,917 - 85,396,591)(85,533,959 - 85,534,582)
sequence
NNNTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTTCACAGACTCTTTTTGTTCCATTTTACTGAGGATT
GATTGCACCATACTTTATCACCTATATAGGGGTCTCAAAATATCCTATAA
CTTAATTGAATCCATGACATAGAAAGATTTAGGTCAATACAGTTAGTATA
TAGGATGCTTTCATTTCTAAAACTTATTTTTAGCAACGGTGCATAGAAGC
TTCAGATGCCCTTGTGATTTACAAACAGCCTCCCCTCCCCCAGCTCTCTG
TCCTTCTCTGTCCTGTGTGGGAGTCTTATCACACCTCACCATGCCTCACC
CCTACAGTTTTATTTAGAAATCATTCACATTCGTAGAAGGACTGAGAGAA
CAGTACAGGGAAAATTCTTCTTGCCCTTAGGCTGCCCCCCTTAGATGAGC
CATTTGAGAATAAGTTACAGATAGCATAGGACTTTATTTCTAAATATTTT
AGCATCTATCACCTAAGAACAACAAAAAACATTCTCATATATGGATCCCT
GTTAATGTCGCACTCAGAAAAACTAACCTTGACACAGTGCCATTATTTGG
CACAGTTCATTTTCAAGTGTATCTTTTGTTTTCTCATTCCAGAATCTAGT
CAAAGATTGTACATTGTATTTGGTTGTCAATTTCTATAATTCTATGTTTT
TTCTTTCTCCCCTCTTCACTCCTTTGCCTTCTTTTATTTTTTTCTTCAGA
AATTCATATTTTAN

NNCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATGAAACCAAACTTGAGC
AGCTAAAGATGTATGAGATGCTGGTCACTCAGTCCTACCAGCCTCTGCTG
CACCACAAGCCCATCCTGAAGCCCCTCATGATGTTGCTGAGCTCCTGTTC
GGGGACAGCCACCCCAGCAGTGGAGGGAAAGCTAGTTGTCCTGCTCAATC
AGCTCTGCTCCATCCTTGCCAAAGATCCATCCATCCTGGAACTCTTCTTC
CACACCAGTGAGGACCAAGGGGCTGCCAACTTCCTCATTTTCTCTCTTCT
GATACCCTTCATTCATCGAGAGGGCACAGTAGGCCAGCAAGCAAGAGATG
CTTTGCTATTTATCATGTCTCTCTCTGCTGAGAACAGCATGGTGGCCAAT
CACATTGTGGAAAATACCTACTTCTGTCCCGTAAGTCCCTCTCCTTGGTG
TACTTCCCCCTCCCTCCTACCCCCTTCTCTTGTGTGCCAAGAGTGTATGC
TTTTGTTCCGTTTGCTCCAAGTTGTACCTTCTGTGGCAAGGTGTTCAGAG
GAACATGCTTAGAGGCAGCAGAGCTACCCAAGTTTCAGTGCTAAAATTTG
GCTAAGCAGCGACAGCCCCAAATACCGCTCTAGACTCTCTTCCGTTTCCC
AATTCATCTTTGTTGTGTTATGCAGAGAGGTTGATTATACTTGCACTTTT
AAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_b09.b1 MSMg01no529_b09.b1 CHROMAT_FILE:
MSMg01no529_b09.b1 PHD_FILE: MSMg01no529_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:54 2005
         (679 letters)



>mm_chr3_85395713_85396791
          Length = 1079

 Score = 1259 bits (651), Expect = 0.0
 Identities = 669/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttcacagactctttttgttccattttactgaggattgattgcaccatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttcacagactctttttgttccattttactgaggattgattgcaccatact 264

                                                                       
Query: 65  ttatcacctatataggggtctcaaaatatcctataacttaattgaatccatgacatagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ttatcacctatataggggtctcaaaatatcctataacttaattgaatccgtgacatagaa 324

                                                                       
Query: 125 agatttaggtcaatacagttagtatataggatgctttcatttctaaaacttatttttagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatttaggtcaatacagttagtatataggatgctttcatttctaaaacttatttttagc 384

                                                                       
Query: 185 aacggtgcatagaagcttcagatgcccttgtgatttacaaacagcctcccctcccccagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacggtgcatagaagcttcagatgcccttgtgatttacaaacagcctcccctcccccagc 444

                                                                       
Query: 245 tctctgtccttctctgtcctgtgtgggagtcttatcacacctcaccatgcctcaccccta 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 tctctgtccttctctgttctgtgtgggagtcttatcacacctcaccatgcctcgccccta 504

                                                                       
Query: 305 cagttttatttagaaatcattcacattcgtagaaggactgagagaacagtacagggaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagttttatttagaaatcattcacattcgtagaaggactgagagaacagtacagggaaaa 564

                                                                       
Query: 365 ttcttcttgcccttaggctgccccccttagatgagccatttgagaataagttacagatag 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctccttgcccttaggctgccccccttagatgagccatttgagaataagttacagatag 624

                                                                       
Query: 425 cataggactttatttctaaatattttagcatctatcacctaagaacaacaaaaaacattc 484
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 625 cataggactttatttctaaatatttcagcatttatcacctaagaacaacaaaaaacattc 684

                                                                       
Query: 485 tcatatatggatccctgttaatgtcgcactcagaaaaactaaccttgacacagtgccatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatatatggatccctgttaatgtcgcactcagaaaaactaaccttgacacagtgccatt 744

                                                                       
Query: 545 atttggcacagttcattttcaagtgtatcttttgttttctcattccagaatctagtcaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttggcacagttcattttcaagtgtatcttttgttttctcattccagaatctagtcaaa 804

                                                                       
Query: 605 gattgtacattgtatttggttgtcaatttctataattctatgttttttctttctcccctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gattgtacattgtatttggttgtcaatttctataattctatgttttttctttctcccctc 864

                          
Query: 665 ttcactcctttgcct 679
           |||||||||||||||
Sbjct: 865 ttcactcctttgcct 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_b09.g1 MSMg01no529_b09.g1 CHROMAT_FILE:
MSMg01no529_b09.g1 PHD_FILE: MSMg01no529_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:54 2005
         (624 letters)



>mm_chr3_85533759_85534782
          Length = 1024

 Score = 1176 bits (608), Expect = 0.0
 Identities = 620/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatgaaaccaaacttgagcagctaaagatgtatgagatgctggtcactcagtcctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 actgatgaaaccaaacttgagcagctaaagatgtatgagatgctggtcactcagtcctac 765

                                                                       
Query: 61  cagcctctgctgcaccacaagcccatcctgaagcccctcatgatgttgctgagctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cagcctctgctgcaccacaagcccatcctgaagcccctcatgatgttgctgagctcctgt 705

                                                                       
Query: 121 tcggggacagccaccccagcagtggagggaaagctagttgtcctgctcaatcagctctgc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcggggacagccaccccagctgtggagggaaagctagttgtcctgctcaatcagctctgc 645

                                                                       
Query: 181 tccatccttgccaaagatccatccatcctggaactcttcttccacaccagtgaggaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tccatccttgccaaagatccatccatcctggaactcttcttccacaccagtgaggaccaa 585

                                                                       
Query: 241 ggggctgccaacttcctcattttctctcttctgatacccttcattcatcgagagggcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggggctgccaacttcctcattttctctcttctgatacccttcattcatcgagagggcaca 525

                                                                       
Query: 301 gtaggccagcaagcaagagatgctttgctatttatcatgtctctctctgctgagaacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtaggccagcaagcaagagatgctttgctatttatcatgtctctctctgctgagaacagc 465

                                                                       
Query: 361 atggtggccaatcacattgtggaaaatacctacttctgtcccgtaagtccctctccttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atggtggccaatcacattgtggaaaatacctacttctgtcccgtaagtccctctccttgg 405

                                                                       
Query: 421 tgtacttccccctccctcctacccccttctcttgtgtgccaagagtgtatgcttttgttc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtgcttccccctccctcctacccccttctcttgtgtgccaagagtgtatgcttttgttc 345

                                                                       
Query: 481 cgtttgctccaagttgtaccttctgtggcaaggtgttcagaggaacatgcttagaggcag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 344 cgtttgctccaagttgtaccttctgtggcaaggtgttcagaggaacatgcttggaggcag 285

                                                                       
Query: 541 cagagctacccaagtttcagtgctaaaatttggctaagcagcgacagccccaaataccgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cagagctacccaagtttcagtgctaaaatttggctaagcagcgacagccccaaataccgc 225

                                   
Query: 601 tctagactctcttccgtttcccaa 624
           ||||||||||||||| ||||||||
Sbjct: 224 tctagactctcttccatttcccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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