Query= MSMg01no529_g03.b1 MSMg01no529_g03.b1 CHROMAT_FILE:
MSMg01no529_g03.b1 PHD_FILE: MSMg01no529_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:19 2005
(687 letters)
>mm_chr3_66944005_66945091
Length = 1087
Score = 1274 bits (659), Expect = 0.0
Identities = 680/693 (98%), Gaps = 10/693 (1%)
Strand = Plus / Plus
Query: 5 gaattctctgtttagttctataccccatttttgattaggttgtttggttttttggaggcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctctgtttagttctataccccatttttgattaggttgtttggttttttggaggcc 254
Query: 65 agcttcttgagttctttctatattttggatattagccctctattgaatgtagggttagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agcttcttgagttctttctatattttggatattagccctctattgaatgtagggttagtg 314
Query: 125 aaggtttttt----------ttttttcccctaatctgtaggttgccaatttgtcctattg 174
|||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 aaggttttttttgttttttgtttttttccctaatctgtaggttgccaatttgtcctattg 374
Query: 175 actgtgtcttttgccttgcagaaactaatcactttcacaaggtcccatttatcaattctt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 actgtgtcttttgccttgcagaaactaatcactttcacaaggtcccatttatcaattctt 434
Query: 235 ggtcttagaacctgagccattgacattctgtttaggaccgcccctcccactggcccccct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggtcttagaacctgagccattgacattctgtttaggaccgcccctcccactggcccccct 494
Query: 295 ttccccatgccaatgagttcaaggctctttcccactttctcctctattagattcagtgta 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttccccatgccaatgagttcaaggctctttcccactttctcctctattagattcagtgta 554
Query: 355 tctggttttaacttgccgtccttgatccacttggagttgtttgtcattacttactgattt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 555 tctggttttaacttgccgtccttgatccacttggagttgtttgtcattacttactaattt 614
Query: 415 cttcaagataacatggtctttagtttgaattttcataagttgatatgtatgtcattttct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttcaagataacatggtctttagtttgaattttcataagttgatatgtatgtcattttct 674
Query: 475 gcactcatttttgatatatattttttccctttaattctgcctgctttcatttggtagact 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcactcatttttgatatatattttttccctttaattctgcctgctttcatttggtagact 734
Query: 535 tctttgaagtctattattattaggcacatgaatgcttataattgtaagaatttcctgtat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctttgaagtctattattattaggcacatgaatgcttataattgtaagaatttcctgtat 794
Query: 595 aacctatatatccttagaaaattactttggtcatttttaagacctgttttcttaaaatct 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 795 aacctatatatccttagaaaattactttgttcatttttaagacctgttttcttaaaatct 854
Query: 655 cttttatctcttgacctattctggttttctcag 687
|||||||||||||||||||||||||||||||||
Sbjct: 855 cttttatctcttgacctattctggttttctcag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_g03.g1 MSMg01no529_g03.g1 CHROMAT_FILE:
MSMg01no529_g03.g1 PHD_FILE: MSMg01no529_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:19 2005
(653 letters)
>mm_chr3_67012266_67013318
Length = 1053
Score = 1174 bits (607), Expect = 0.0
Identities = 640/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 1 atctgtctgcctgtctacctgtctgtctgactatctatcttctttttctattcatctgtg 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atctgtctgcctgt----ctgtctgtctgactatctatcttctttttctattcatctgtg 859
Query: 61 gacatctaggctgggaccatttctgactatcaagaattatgcagtatgaaatacagaggt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 858 gacatctaggctgggaccatttctgactatcaagaattatgcagtattaaatacagaggt 799
Query: 121 aaaggtctgtctgtggtactcatctgaagtctttctggtatatagcctgggtcataagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaggtctgtctgtggtactcatctgaagtctttctggtatatagcctgggtcataagta 739
Query: 181 tgtctattcctagattcttgaatagcttgtattctaatttccacagcatacaaataaatt 240
||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 738 tgtctattcctagtttcttgaatagcttgtattataattttcacagcatacaaataaatt 679
Query: 241 aaggtttaaaatttcagatcattagtttctccacaaatgacttatctattagagtttaat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaggttgaaaatttcagatcattagtttctccacaaatgacttatctattagagtttaat 619
Query: 301 agttgtaattttattatggtgctatgatagagacaaaaatgacctactagggaaaggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agttgtaattttattatggtgctatgatagagacaaaaatgacctactagggaaaggaaa 559
Query: 361 taggagaaaacaaaacaaaacataacatgagcagaaagttctaatgcaaacaggacatag 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 taggagaaaacaaaacaaaacaaaacatgagcagaaagttctaatgcaaacaggacatag 499
Query: 421 acaaggaatgcaaggagtaattatagtttacagttatgaattttaagaaatgattcattt 480
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 acaaggaatgtaaggagtaattatagtttacagttatgaattttaagaaatgattctttt 439
Query: 481 agagtctgttggactcttgggcacatacccaaatgactctatattgtaccacagagacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agagtctgttggactcttgggcacatacccaaatgactctatattgtaccacagagacac 379
Query: 541 ctgtccaaatatgttcactgctgctttatttataatagccaaaaatttcaaatagcctag 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgtccaaatatgttcactgctgctttatttataatagccaaaaatttcaaatagcctac 319
Query: 601 atgtgcatcaatgaaaaagtggagtacatttacaaaatggaatattacttggc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgtgcatcaatgaaaaagtggagtacatttacaaaatggaatattacttggc 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
