TTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCTGCATTTCTCATGGGCTTTGCACACTGTTTTCAAGTT
GAAGTCTCAGTGAGCACAAGCTAGTCAGTAGGCAGTCAGCAACCTAGCAA
GTTAGTAAAGCAACTCAAAAGTACAATGTGATTTGTTTATCAAGTACAGT
TTTGAGGGGCTGGAGACATGACTCAGTGCTAGATTTTCTTCCAGAGGACC
CAGGTTCGATTCCCAGCACCCACGTGACATCTCAAACTATATGTAACTCC
AGTTCTAGGGGATCTGACGCCCTCTTCTGTCTTCAATGGGCACCCAGATA
CAGATGTGGTACAGAGACATACCCTCAAGTTAACATTTATATGCATAAAA
TAAAAAAGAGATACAACTTTGAAGCTGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTGTGTGTACATCTCAAACATGAATTCTACATTCCTAC
ATTAGAGTTGAAGAGTCTACTTATAGTAGACATTGAAGTTAACTTTTAAT
CACCTAAGAACAAGTTGGCACATTTGGGGAAACCTTGGGAAAAGGCAATC
CTAAGGGATTTGTGGAGGTAATTTAAATGTTTGTCAGTCATCTGGATTCC
CCCACAGTAAGGAGTTGTTTATGATTTAGAACTATGTAGTAGATAAGTAC
TCACACAGCATCTTTTTCACTCTCAACATGGGGGCACAAGCTTCCTGGCC
AGTCAA

NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACTCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGTGGTTCCTCAGAAAGTTGGACATAGTACTATCAGAGG
ATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATATTCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAACCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCCT
GAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGA
TAAGTGGATGTTAGCCCAGAAACTTAGAATACCCAAGGTATTAGATAAAA
TTTGCTAAACACATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACAC
TTTTGCCCCTN

Query= MSMg01no529_j04.b1 MSMg01no529_j04.b1 CHROMAT_FILE:
MSMg01no529_j04.b1 PHD_FILE: MSMg01no529_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:36 2005
         (667 letters)



>mm_chr3_29940447_29941513
          Length = 1067

 Score =  833 bits (431), Expect = 0.0
 Identities = 448/461 (97%), Gaps = 12/461 (2%)
 Strand = Plus / Minus

                                                                        
Query: 207  cgattcccagcacccacgtgacatctcaaactatatgtaactccagttctaggggatctg 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 cgattcccagcacccacgtgacatctcaaactatatgtaactccagttctaggggatctg 1008

                                                                        
Query: 267  acgccctcttctgtcttcaatgggcacccagatacagatgtggtacagagacataccctc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 acgccctcttctgtcttcaatgggcacccagatacagatgtggtacagagacataccctc 948

                                                                        
Query: 327  aagttaacatttatatgcataaaataaaaaagagatacaactttgaagctgtatgtatgt 386
            ||||||||||||||||||||||||| |||||||||||||||||||||||           
Sbjct: 947  aagttaacatttatatgcataaaattaaaaagagatacaactttgaagc----------- 899

                                                                        
Query: 387  atgtatgtatgtatgtatgtatgtatgtgtgtgtacatctcaaacatgaattctacattc 446
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  -tgtatgtatgtatgtatgtatgtatgtgtgtgtacatctcaaacatgaattctacattc 840

                                                                        
Query: 447  ctacattagagttgaagagtctacttatagtagacattgaagttaacttttaatcaccta 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  ctacattagagttgaagagtctacttatagtagacattgaagttaacttttaatcaccta 780

                                                                        
Query: 507  agaacaagttggcacatttggggaaaccttgggaaaaggcaatcctaagggatttgtgga 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  agaacaagttggcacatttggggaaaccttgggaaaaggcaatcctaagggatttgtgga 720

                                                                        
Query: 567  ggtaatttaaatgtttgtcagtcatctggattcccccacagtaaggagttgtttatgatt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  ggtaatttaaatgtttgtcagtcatctggattcccccacagtaaggagttgtttatgatt 660

                                                     
Query: 627  tagaactatgtagtagataagtactcacacagcatcttttt 667
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  tagaactatgtagtagataagtactcacacagcatcttttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)