NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTTTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGCTTTAGCTCCCTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCTGTTTTTATCATAATTG
CTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAAGTTCTT
TCATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAA
AATTTGCAATTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCTGATTCTTAATTCAAGG
TAATAAAAAAATACATCGCATGACCTAGAGAGGGCAAAGCACCTATGCTT
TCCCAAGTGTCTCTGTATGTCATAAAGTCTCGGCTCTTGCAAAAACCTGA
AGGAGAAACTTTTATCTTCTTTGAAAAAACTGTTAGTACAATTTAATTAT
CAATGAACAGTGAGCATCTTAAGTTATTCTTTAAATAGAAAATCTATATA
ACAACACTTATGCTAGCTCAGCATGTTTAAGAGAGCATTGTGAAGTAGGT
CACTGAGATTCTGTGGGATTTCTGCCTCTTTGGAGGGAGCAGATGTTTCC
TTATTTCATCCTGAGGGTGGGAAAGACAGGAAGGAAGGGAAAAAAGGAAG
GAAGGAAGGGAGAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAACTGCTTTTTAATCTCTAAAAATTT
GAAGTTAATTTTTGAGTCTAAAAAACATGCAAATATTCGTAAAGAAAAAA
TTGTCTGTAGTGTATAATTTCAGTGACTGTCACTACTAATAGAAATTATT
TTCAAATTTATTTATTGTTTCTAAGTTAAACTAATAAGAGAATTTAAACA
TAGATCCCCTTTCCCTTTCAAACTGTTTCTGCTCACGTAACGCTATAATC
ATCATAACAT

Query= MSMg01no529_l14.g1 MSMg01no529_l14.g1 CHROMAT_FILE:
MSMg01no529_l14.g1 PHD_FILE: MSMg01no529_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:48 2005
         (683 letters)



>mm_chr3_79862315_79863395
          Length = 1081

 Score =  938 bits (485), Expect = 0.0
 Identities = 532/563 (94%), Gaps = 27/563 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgctgattcttaattcaaggtaataaaaaaatacatcgcatgacctagagagggcaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 536 aaatgctgattcttaattcaaggtaat-aaaaaatacatcgcatgacctagagagggcaa 478

                                                                       
Query: 61  agcacctatgctttcccaagtgtctctgtatgtcataaagtctcggctcttgcaaaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agcacctatgctttcccaagtgtctctgtatgtcataaagtctcggctcttgcaaaaacc 418

                                                                       
Query: 121 tgaaggagaaacttttatcttctttgaaaaaactgttagtacaatttaattatcaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgaaggagaaacttttatcttctttgaaaaaactgttagtacaatttaattatcaatgaa 358

                                                                       
Query: 181 cagtgagcatcttaagttattctttaaatagaaaatctatataacaacacttatgctagc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 357 cagtgagcatcttaagttattctttaaatagaacatctatataacaacacttatgctagc 298

                                                                       
Query: 241 tcagcatgtttaagagagcattgtgaagtaggtcactgagattctgtgggatttctgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcagcatgtttaagagagcattgtgaagtaggtcactgagattctgtgggatttctgcct 238

                                                                       
Query: 301 ctttggagggagcagatgtttccttatttcatcctgagggtgggaaagacaggaaggaag 360
           |||||||||||||||||| |||||||| |||||||||| |||||||||||          
Sbjct: 237 ctttggagggagcagatg-ttccttatatcatcctgagagtgggaaagac---------- 189

                                                                       
Query: 361 ggaaaaaaggaaggaaggaagggagaaaaggaaggaaggaaggaaggaaggaaggaagga 420
                      ||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 188 -----------aggaaggaagggagaa----aaggaaggaaggaaggaaggaaggaagga 144

                                                                       
Query: 421 aggaaggaaggaaggaaggaaggaaggaactgctttttaatctctaaaaatttgaagtta 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 143 aggaaggaaggaaggaaggaaggaaggaactactttttaatctctaaaaatttgaagtta 84

                                                                       
Query: 481 atttttgagtctaaaaaacatgcaaatattcgtaaagaaaaaattgtctgtagtgtataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  atttttgagtctaaaaaacatgcaaatattcgtaaagaaaaaattgtctgtagtgtataa 24

                                  
Query: 541 tttcagtgactgtcactactaat 563
           |||||||||||||||||||||||
Sbjct: 23  tttcagtgactgtcactactaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space:   720783
Effective search space used:   720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)