Query= MSMg01no529_m13.b1 MSMg01no529_m13.b1 CHROMAT_FILE:
MSMg01no529_m13.b1 PHD_FILE: MSMg01no529_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:53 2005
(682 letters)
>mm_chr3_25337747_25338824
Length = 1078
Score = 1253 bits (648), Expect = 0.0
Identities = 672/682 (98%), Gaps = 4/682 (0%)
Strand = Plus / Plus
Query: 1 taacttgtgttcctcacacatacaatgacaattaggagacagaaaaatcacagattctct 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacttgtgttactcacacatacaatgacaattaggagacagaaaaatcacagattctct 260
Query: 61 gttgatgaatattctaatttcttctttattacatataaataatagaaagtattcactctg 120
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 261 gttgatgaatattctaatttcttctttgttacatataagtaatagaaagtattcactctg 320
Query: 121 tgaaattctccagatagctctcctattaataatggaattgcaatcctgttcataatgtaa 180
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaattcttcagatagctctccaattaataatggaattgcaatcctgttcataatgtaa 380
Query: 181 ttgtaatgagtgactgaatgtctgatcacaatgatgacaagcactttagtcaaagtactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaatgagtgactgaatgtctgatcacaatgatgacaagcactttagtcaaagtactt 440
Query: 241 aaagccagaaaatggaagtaagaaaaatattttgtgtatcaaagcaggctagtgctctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagccagaaaatggaagtaagaaaaatattttgtgtatcaaagcaggctagtgctctat 500
Query: 301 actgccttgccaagccttaggagaaaacaaaccaaaccaaaacaacaaacttgagctgaa 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 actgccttgccaagccttaggagaaaccaaaccaaaccaaaacaacaaacttgagctgaa 560
Query: 361 aagagaaaaccacaaaatcaaatgtctttttctttgtaatcaaatgttctactggtgacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagagaaaaccacaaaatcaaatgtctttttctttgtaatcaaatgttctactggtgacc 620
Query: 421 tcaatgctttgacaattttggatcacgcatgcaaactaatcaaaagcttcaagtatctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaatgctttgacaattttggatcacgcatgcaaactaatcaaaagcttcaagtatctat 680
Query: 481 gtccctgtgtttaaaaatatttgattttgcctactgaataagcagaaaggacagagtgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtccctgtgtttaaaaatatttgattttgcctactgaataagcagaaaggacagagtgtt 740
Query: 541 gaaagtctttgtctgatttttccctcaaatcaagcctttgaaaacagaaaattactacaa 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaagtctttg----atttttccctcaaatcaagcctttgaaaacagaaaattactacaa 796
Query: 601 cgctcagctcatcattctgaagtggacttgaaaatgcatcttacccagctccatggaaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgctcagctcatcattctgaagtggacttgaaaatgcatcttacccagctccatggaaga 856
Query: 661 cagagagaagagtctgacagaa 682
||||||||||||||||||||||
Sbjct: 857 cagagagaagagtctgacagaa 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1078
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1068
Effective search space: 717696
Effective search space used: 717696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_m13.g1 MSMg01no529_m13.g1 CHROMAT_FILE:
MSMg01no529_m13.g1 PHD_FILE: MSMg01no529_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:53 2005
(631 letters)
>mm_chr3_25479867_25480897
Length = 1031
Score = 1197 bits (619), Expect = 0.0
Identities = 628/631 (99%)
Strand = Plus / Minus
Query: 1 tttctcctcgttcttccccctcctgagtgctgtgatttccactttgtgccatgtgttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttctcctcgttcttccccctcctgagtgctgtgatttccactttgtgccatgtgttttg 627
Query: 61 ttttagtcatgtcttggactgagccgcagagctctggagaggataggtgtgctctctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttttagtcatgtcttggactgagccgcagagctctggagaggataggtgtgctctctatg 567
Query: 121 attggagcagcatctccttgccttcacttatgtccagctttattttaccagtttggggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attggagcagcatctccttgccttcacttatgtccagctttattttaccagtttggggtt 507
Query: 181 tgacaccaaaatatgtgatttattagaactcttgttatttaaaaagaggatgagtgtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tgacaccaaaatatgtgatttattagaactcttgttatttaaaaagaggatgagtataag 447
Query: 241 cgtttcctctgaattcttcttacaaacctaaaaactttcttggtggtatagcacttgttt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 cgtttcctctgaattcttcttacaaacctaaaaactttcttggtgttatagcacttgttt 387
Query: 301 gatgtagtctactctttttgctagttcagacagccacacctactttgcttctagatcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gatgtagtctactctttttgctagttcagacagccacacctactttgcttctagatcctg 327
Query: 361 aagatagcttacattcacaatttgcttgtagcttcctggtccaaagtccactgtctaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagatagcttacattcacaatttgcttgtagcttcctggtccaaagtccactgtctaatt 267
Query: 421 tttaaacactgaattatgctatagttaagaactctgttatctccaaactctgttaaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttaaacactgaattatgctatagttaagaactctgttatctccaaactctgttaaattt 207
Query: 481 ttaaattagatatatagatagatgtatcagtggataatagatagggagataaattataga 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 206 ttaaattagatatatagatagatgtatcggtggataatagatagggagataaattataga 147
Query: 541 caggtagatggatggtagatagatcatagatagatagatagatagatagatagatagata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 caggtagatggatggtagatagatcatagatagatagatagatagatagatagatagata 87
Query: 601 gatagatagatagatagatagatagatagat 631
|||||||||||||||||||||||||||||||
Sbjct: 86 gatagatagatagatagatagatagatagat 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 29
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
