BAC Information

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BAC

Clone NameMSMg01-529O09
Chromosome3 (Build37)
Map Location 90,917,576 - 90,917,826
singlet/doubletsinglet
Overlap genenone
Upstream geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529O09.T7 (MSMg01no529_o09.b1)MSMg01-529O09.TJ (MSMg01no529_o09.g1)
ACCAG598667AG598668
length754746
length of high quality
(start - end)		705 (48 - 752)663 (76 - 738)
definitionCHROMAT_FILE: MSMg01no529_o09.b1 PHD_FILE: MSMg01no529_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:02 2005CHROMAT_FILE: MSMg01no529_o09.g1 PHD_FILE: MSMg01no529_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTACTTGTTCCAAAATCCAAAACACATTTATACAGGTTAACTC
TGAATGTGGTGATGGTGAACATTATGTTATATTCTGTTGATGAAAAACCT
TGGTCTGGATGACCACAAACAATTATGTCTCTCCTGATTATGGCATAATT
CTTACCCTATATTTTCCTGGAACTATTTACTATTCTTATTAGGATAAGTT
GATGGAATACAGGTCACACTTTAAAATTGTTCAGAGGTGGGAAATGCTCA
TATGTGGGAACTAAAAAAGGGGGCCAAGAGGAAAGAGGGGGGAAAGCCCA
TACCCTGCCCGAGTTTCATCTATCCTCTGGTCTCTCAGGTGTTGGAGGGC
TGTTAACTACCTTCATCTCATCTCTAGATGTGCATTCTCCTATCCACTCT
TCCAGATGTGGCCAAGGGGCAGCCCTACCTGGTGACCCTGGAGCTACTTT
GTTAAAGCCACCGGGTTTATAGGAGAGAGGGATAATTAAGAGGTTGCCAA
TACCTGCAAGAGTGAGTGCAGCAGATGAACAGAGAATGTCTATGGTTTTA
GAGATTTATTGTAAAAAGGGAGGTGGAAAGAGAGAAGGTAGAAAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAATTGCTAA
AGAGAAAGAGTAAGAAGGAAGAGGAAAGGAGAAGACTAAGAGAAAGGTAA
GAGG

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATTGCTGTATCAAGACAGACAGA
GGATATCTACAGGAATTTTCTGTGCAGAGTTGTTCTTTCTTTAACCCTCC
CTGAATTCTACTCACTAAATTGACACAGGAATTGTTAGCAAATCATGTGT
CAGGTTCAAAGTGTTTTAGGCAAGGTGTCCCAGTAAGAGAATGTAAGATC
TGCAGCTTGTGGTGCTCTCAGACTCACTAAGATCAATCACCAGTACACTT
AAGCCCCATCACTCCTATTAACAAATGCTTTATTACCTAGAAAGTTCCAC
CACTTTAGGAGTCCATATTGGCTTTTTTTTTTCTCGGGATTTCCCAGTCA
GTAGCTTCAGTGGGAGTCACTCATTAGTTGTCTCCAGGGGAAGAAATGAG
GAGGAAGTAACTTAGAATACTCGAGGGAACATTCAATTCTCTGCCTGAGA
CTTGTGTTTATATTCCTTCTAGTTCCTGTGTTTGCAGCCTCTGCAACTGT
AAAAGCCACTAACCTATTGCCAGGCCAGTTTTCAAGGAAGATGCCTTTTA
TTCAGGCTAATTTTTATAGACAAATGTTGGATACTTCTAGACAAACTGAC
TGTCCTATTTTTCTGCAAAACAGAGTCCTATCTCTGAATTTGGAAGGCTG
GCAGAACCAAATTGCAAAGTATTAACCTCTGTTTAGTATGTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_o09.b1 MSMg01no529_o09.b1 CHROMAT_FILE:
MSMg01no529_o09.b1 PHD_FILE: MSMg01no529_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:02 2005
         (705 letters)



>mm_chr3_90917372_90918475
          Length = 1104

 Score =  252 bits (130), Expect = 1e-70
 Identities = 223/256 (87%), Gaps = 9/256 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacttgttccaaaatccaaaa-cacatttatacaggttaactctgaatgtggt 63
           ||||||| ||||| |||||||||||||| | |||||| |||  |||||||||||||||| 
Sbjct: 205 gaattcccacttggtccaaaatccaaaatc-catttacacatcttaactctgaatgtggc 263

                                                                       
Query: 64  gatggtgaacattatgttatattctgttgatgaaaaaccttggtctggatgaccacaaac 123
            ||||||||  ||||||| |||||  ||| ||| ||||||||||||||||||||||||||
Sbjct: 264 aatggtgaatgttatgttgtattccattggtgacaaaccttggtctggatgaccacaaac 323

                                                                       
Query: 124 aattatgtctctc-ctgattatggcataattcttaccctatattttcctggaactattta 182
           |||| |||| | | ||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 324 aattttgtccc-cactgcttatggcataattcttacactatattttcctggaaatattta 382

                                                                       
Query: 183 ctattcttattaggataagttgatggaatacaggtcacacttt--aaaattgttcagagg 240
           || ||||||||||||||| ||||||||||| | ||||||   |  |||||||||||||||
Sbjct: 383 ctgttcttattaggataaattgatggaatataagtcaca---tgaaaaattgttcagagg 439

                           
Query: 241 tgggaaatgctcatat 256
           ||| ||||||||||||
Sbjct: 440 tggaaaatgctcatat 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1104
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1094
Effective search space:   760330
Effective search space used:   760330
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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