Query= MSMg01no530_c18.b1 MSMg01no530_c18.b1 CHROMAT_FILE:
MSMg01no530_c18.b1 PHD_FILE: MSMg01no530_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:24 2005
(692 letters)
>mm_chr3_33977912_33979000
Length = 1089
Score = 1168 bits (604), Expect = 0.0
Identities = 655/688 (95%), Gaps = 26/688 (3%)
Strand = Plus / Minus
Query: 5 gaattccacaggtctttggagctcagtgtggagttgtaaaccttgcaatgggccacacta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gaattccacaggtccatggagctcagtgtggagttgtaaaccttgcaatgggccacactg 972
Query: 65 ggagttggttttcacatgtgacaactgagggtgggtggcctttgcagatttagaacgata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggagttggttttcacatgtgacaactgagggtgggtggcctttgcagatttagaacgata 912
Query: 125 gcaggtagttagcaattaattttactacatatactgttgacccagtactacatatactgt 184
|||||||||||||||||||||| |||||||||||||||
Sbjct: 911 gcaggtagttagcaattaattt-----------------------tactacatatactgt 875
Query: 185 tgacccaggtttatctgtccagctgccttccctcgtgttttgtcacataggatagctttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgacccaggtttatctgtccagctgccttccctcgtgttttgtcacataggatagctttg 815
Query: 245 cagcgatgttagataacggctctgaactgggtgtaaagcacaaagctgcttctagtcagg 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 814 cagcgatgttagataacggctctgaactgggtgtaaagcacaaagctgctgctagtcagg 755
Query: 305 actttgagaggccatgtcatggagcttgggcaggagcatagggccttgttgtacatgatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 actttgagaggccatgtcatggagcttgggcaggagcatagggccttgttgtacatgatc 695
Query: 365 tctactaaggttaagattctgatggcataaatgtccctaccataaagtcttattttagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tctactaaggttaagattctgatggcataaatgtccctaccataaagtcttattttagtt 635
Query: 425 gttgccttgaatcttttcgagatctccaggtcgtcttttgagaccttttgaaactcctgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gttgccttgaatcttttcgagatctccaggtcgtcttttgagaccttttgaaactcctgt 575
Query: 485 tttacgggggtcaagtttctgtctggaatatggatgagagtggctgccattcactcatct 544
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tttacggggatcaagtttctgtctggaatatggatgagagtggctgccattcactcatct 515
Query: 545 ccccccccccccccccgccatcttatgttctcaagacactgttccagtttagttgcaaga 604
|||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cccctccccccctccc---atcttatgttctcaagacactgttccagtttagttgcaaga 458
Query: 605 aatgggtgtttaacacatcttaaaatagttggctacccctggtcaagctaaagtgccttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatgggtgtttaacacatcttaaaatagttggctacccctggtcaagctaaagtgccttg 398
Query: 665 ggaagtacacttgtacttccctgaaatg 692
||||||||||||||||||||||||||||
Sbjct: 397 ggaagtacacttgtacttccctgaaatg 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1089
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1079
Effective search space: 735878
Effective search space used: 735878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_c18.g1 MSMg01no530_c18.g1 CHROMAT_FILE:
MSMg01no530_c18.g1 PHD_FILE: MSMg01no530_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:24 2005
(626 letters)
>mm_chr3_33848724_33849749
Length = 1026
Score = 1151 bits (595), Expect = 0.0
Identities = 620/633 (97%), Gaps = 9/633 (1%)
Strand = Plus / Plus
Query: 1 aagtgtgacagcagctaagcttgacacaagtctgaagaaatgagtatcagcaatgaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aagtgtgacagcagctaagcttgacacaagtctgaagaaatgagtatcagcaatgaaatt 260
Query: 61 agattcattcaataaaatataacaccccaaaatggatcaatagcccttttgttaattaaa 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 agattcattcaataaaatataacaccccgaaatggatcaatagcccttttgttaattaaa 320
Query: 121 taagctgaaattgattagaggaaacacaaatgcaaaaataagagaatttattttattgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagctgaaattgattagaggaaacacaaatgcaaaaataagagaatttattttattgta 380
Query: 181 aacttttcactttatattttattataactttaatattttaggattgcttattttaaagga 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aacttttcactttatattttattataacttaaatattttaggattgcttattttaaagga 440
Query: 241 tttatttattattgtctgagtgctttgtacagatgtgccatatgcatttgtatttatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttattattgtctgagtgctttgtacagatgtgccatatgcatttgtatttatgtg 500
Query: 301 caccatatgcctgatgcaccagaatagagagtcagattctatggagcagaagttacagaa 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccatatgcctgacgcaccagaatagagagtcagattctatggagcagaagttacagaa 560
Query: 361 tgtgctgagctgtcacacacctggctacatgaagaattcttataagtcaatataagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgctgagctgtcacacacctggctacatgaagaattcttataagtcaatataagaaaa 620
Query: 421 agatgttctcttagctgaacgtggtggcacacgcctttaatcccagcactctggaggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgttctcttagctgaacgtggtggcacacgcctttaatcccagcactctggaggcag 680
Query: 481 aggcaggtggatttctgagttcgagaggccagcctggtctacaaagtgagttccaggaca 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 aggcaggtggatttctgagttcgag--gccagcctggtctacaaagtgagttccaggaca 738
Query: 541 gacagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaa-------g 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 739 gacagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaagaag 798
Query: 594 aagaagaaagaaagaaagaaaaagataatttcc 626
|||||||||||||||||||||||||||||||||
Sbjct: 799 aagaagaaagaaagaaagaaaaagataatttcc 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
