Query= MSMg01no530_c21.b1 MSMg01no530_c21.b1 CHROMAT_FILE:
MSMg01no530_c21.b1 PHD_FILE: MSMg01no530_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:24 2005
(701 letters)
>mm_chr3_49413201_49414301
Length = 1101
Score = 1344 bits (695), Expect = 0.0
Identities = 698/699 (99%)
Strand = Plus / Plus
Query: 3 ggaattccaccagttattcgtcctgaactatttctcactcaggtatttccttaggcaaaa 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccaccagttatttgtcctgaactatttctcactcaggtatttccttaggcaaaa 262
Query: 63 ttgtggataatctttttcatctctcaggagtaaacccaccaccaattttttttttgagca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgtggataatctttttcatctctcaggagtaaacccaccaccaattttttttttgagca 322
Query: 123 catattaatttcctgtgtaattaactttccttctacctacattttttgctggtgaatatc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catattaatttcctgtgtaattaactttccttctacctacattttttgctggtgaatatc 382
Query: 183 aaggaggcaaagtagtgaaatgcttttctttagttcatgttttacttccacacaaattat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaggaggcaaagtagtgaaatgcttttctttagttcatgttttacttccacacaaattat 442
Query: 243 gtaatgttatgactatttatggctcactgttatatgtagaatggataagcagcttttcta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtaatgttatgactatttatggctcactgttatatgtagaatggataagcagcttttcta 502
Query: 303 aaagactctgtatataaatttccatttgtttctcccactgactgttggcttttcctggcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaagactctgtatataaatttccatttgtttctcccactgactgttggcttttcctggcc 562
Query: 363 aggatttaaatggcctgttcctttataaacacatgttgttaggggttgtctgccatcttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggatttaaatggcctgttcctttataaacacatgttgttaggggttgtctgccatcttt 622
Query: 423 gttaacaacaactttatttgactacagttagttaaatataaaggaatcataatgtatagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttaacaacaactttatttgactacagttagttaaatataaaggaatcataatgtatagg 682
Query: 483 taggtatcttaaaatgaactatttttggaggtagattcataatcaacttacgatgaacac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taggtatcttaaaatgaactatttttggaggtagattcataatcaacttacgatgaacac 742
Query: 543 ttgaacaacattttgttctgtttactctctgagaacaattttcttcaatgaaaagcatct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgaacaacattttgttctgtttactctctgagaacaattttcttcaatgaaaagcatct 802
Query: 603 aaaggctgtttagacagaggtattactgtgaagggatgacacatgcagttcagtgccagg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaggctgtttagacagaggtattactgtgaagggatgacacatgcagttcagtgccagg 862
Query: 663 ctgttttctaaattctatgtaggaaaaaaaatgaaatag 701
|||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctgttttctaaattctatgtaggaaaaaaaatgaaatag 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_c21.g1 MSMg01no530_c21.g1 CHROMAT_FILE:
MSMg01no530_c21.g1 PHD_FILE: MSMg01no530_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:24 2005
(582 letters)
>mm_chr3_49556425_49557407
Length = 983
Score = 1120 bits (579), Expect = 0.0
Identities = 582/583 (99%), Gaps = 1/583 (0%)
Strand = Plus / Minus
Query: 1 aggtaagagggccgtgatagctaaatctttattttcacagctaccacagagccaggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aggtaagagggccgtgatagctaaatctttattttcacagctaccacagagccaggatga 724
Query: 61 cgaacagcttctcccatgcttctgtttctgctgtccttttcctttacactggaaataggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cgaacagcttctcccatgcttctgtttctgctgtccttttcctttacactggaaataggt 664
Query: 121 gggatctctgcactattagcagtggacaagcgtgagacatttaa-ttttttttttcttct 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 663 gggatctctgcactattagcagtggacaagcgtgagacatttaatttttttttttcttct 604
Query: 180 caaaatccacaataagcagttggtagagaaggaatgaatgtgaaggcttaataggagaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caaaatccacaataagcagttggtagagaaggaatgaatgtgaaggcttaataggagaag 544
Query: 240 gaaggggagagagcactgaaagaagaccaagccccgcccccctccctctttcttatccag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaaggggagagagcactgaaagaagaccaagccccgcccccctccctctttcttatccag 484
Query: 300 ccagtgccattgggcgctcctaagcaactccagaaaattgctaggtgcctgtttgtattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccagtgccattgggcgctcctaagcaactccagaaaattgctaggtgcctgtttgtattc 424
Query: 360 agacagcctgttcggtggatagtggtgaactggactataatttggaggatgcatttcctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agacagcctgttcggtggatagtggtgaactggactataatttggaggatgcatttcctg 364
Query: 420 tgatgggaaccaactcacaaaatcaagagcctaaaatacactggaaagggtatattttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgatgggaaccaactcacaaaatcaagagcctaaaatacactggaaagggtatattttaa 304
Query: 480 gcactaaaaataggcaaaggaatgtacctttggaggtggtgtgcagagcgtatttcatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcactaaaaataggcaaaggaatgtacctttggaggtggtgtgcagagcgtatttcatgc 244
Query: 540 cccctctcattttgagtcggtacagcaatagaggagggaaaca 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cccctctcattttgagtcggtacagcaatagaggagggaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
