Query= MSMg01no530_d19.b1 MSMg01no530_d19.b1 CHROMAT_FILE:
MSMg01no530_d19.b1 PHD_FILE: MSMg01no530_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:29 2005
(629 letters)
>mm_chr3_51536798_51537830
Length = 1033
Score = 949 bits (491), Expect = 0.0
Identities = 573/629 (91%), Gaps = 45/629 (7%)
Strand = Plus / Plus
Query: 1 tgaggtagagctgccttgctcacagggacaccacatcaactgttagtgggtgagaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggtagagctgccttgctcacagggacaccacatcaactgttagtgggtgagaagtaa 260
Query: 61 acacaaggcaatccacgggactatagggcagcagccagcatgcacactggccaccgtggc 120
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaaggcaatccacaggactgtagggcagcagccagcatgcacactggccaccgtggc 320
Query: 121 accccacgg----gactgcagggcaccacatgagacattttgcttcacagaaagtgccca 176
|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 accccatgggactgactgcagggcaccacatgagactttttgcttcacagaaagtgccca 380
Query: 177 ttccctccctccatccttggttcaactatgcccacacttaaatctgaagcaccttaattt 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ttccctccctccatccttggttcaactatgtccacacttaaatctgaagcaccttaattt 440
Query: 237 catgagggatttttgtcaaagatatttttgatatcttacgccatagcttaagctgtttac 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgagggatttttgtcaaagatatttttgatatcttacgccatagcttaagctgtttat 500
Query: 297 gaaaaacagcagcatccagtaaaagatcacgtacctgatttacataaacaagctgtttca 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaaacagcagcatccagtaaaagatcacgtacctgatttacataaacaagctgtttca 560
Query: 357 tgatccccgagtgttagtatttattacgtagcttaggctcattgagtcttagcggtaaac 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tgatccccgagtgttagtatttattacatagcttaggctcattgagtcttagcggtaaac 620
Query: 417 ggcacaggtcttgctaaccaacaatacacccatgttttgaccgagagttgcaaatgcctc 476
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 agcacaggtcttgctaaccaacaatacacccatgttttgactgagagttgcaaatgcctc 680
Query: 477 tgcaggaaccaacaacactatagacaagcaacaccagatgctctaactgagctcagagtg 536
|||||||||||||||||||||||||||
Sbjct: 681 tgcaggaaccaacaacactatagacaa--------------------------------- 707
Query: 537 tttagaaatgatatactgtgagttcctggagccatggtagtggtgctttgctgtgctgtg 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 --------tgatatactgtaagttcctggagccatggtagtggtgctttgctgtgctgtg 759
Query: 597 tggtattggctgatgcatgggctctgggt 625
|||||||||||||||||||||||||||||
Sbjct: 760 tggtattggctgatgcatgggctctgggt 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1033
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1023
Effective search space: 633237
Effective search space used: 633237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_d19.g1 MSMg01no530_d19.g1 CHROMAT_FILE:
MSMg01no530_d19.g1 PHD_FILE: MSMg01no530_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:29 2005
(677 letters)
>mm_chr3_51688731_51689807
Length = 1077
Score = 1178 bits (609), Expect = 0.0
Identities = 633/649 (97%), Gaps = 13/649 (2%)
Strand = Plus / Minus
Query: 1 tctctaatcttaggatttcagttttgtgaaggagcttcttgagggtcattccaaaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tctctaatcttaggatttcagttttgtgaaggagcttcttgagggtcattccaaaattct 590
Query: 61 tgggcttgtgatctgtatagcacttccaaaaggaggaagactgaataaatattcatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 589 tgggcttgtgatctgtatagcacttccaaaaggaggaagactgaatacatattcatgttt 530
Query: 121 aagacccaggagaagaacatgtttggggctatacacagtttccccgggaacagacttgtc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 529 aagacccaggagaagaacatgtttggggctatacacagcttccccgggaacagacttgtc 470
Query: 181 caggagactgctcattcattgtaccctttgtttctccagtccatcctggaaaccactcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 caggagactgctcattcattgtaccctttgtttctccagtccatcctggaaaccactcag 410
Query: 241 gggttggctgagattcggccgtctaagaagtaaccaggcaaggtcactaccaccgagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gggttggctgagattcggccgtctaagaagtaaccaggcaaggtcactaccaccgagtct 350
Query: 301 acactcctgtggagaagaaggtggcccaaggggaggagtgacaggccaggggattataca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 349 acactcctgtggagaagaaggtggcccaaggggaggagtgacaggcgaggggattataca 290
Query: 361 tcatgacaaggggcaccatgaagatcaaacagatgaaagtgagagaaagagatggcaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcatgacaaggggcaccatgaagatcaaacagatgaaagtgagagaaagagatggcaggg 230
Query: 421 aggcagagtggccaggacaacctcaat-------------ccctctgtacaggcagggaa 467
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 229 aggcagagtggccaggacaacctcaatcctgggagtctgcccctctgtacaggcagggaa 170
Query: 468 ctgcagagttagcataggtcataattgtaagagagctttgctacaggagagggtggggcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctgcagagttagcataggtcataattgtaagagagctttgctacaggagagggtggggcc 110
Query: 528 aaaatgtgtaaagccaaccagcatctcctaagccatgtgacaaatttaactttgatgaat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aaaatgtgtaaagccaaccagcatctcctaagccatgtgacaaatttaactttgatgaat 50
Query: 588 gtgaaaatctgtagaaatttagacggaaaagcgtgacctgaattttttt 636
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gtgaaaatctgtagaaatttagacggaaaagcgtgacctgaattttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
