Query= MSMg01no530_f13.b1 MSMg01no530_f13.b1 CHROMAT_FILE:
MSMg01no530_f13.b1 PHD_FILE: MSMg01no530_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:38 2005
(719 letters)
>mm_chr3_128024012_128025131
Length = 1120
Score = 1340 bits (693), Expect = 0.0
Identities = 711/717 (99%), Gaps = 1/717 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactcctcttctctgcctcccactatgttcaatggcctctctatggcctcatgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcctcttctctgcctcccactatgttcaatggcctctctatggcctcatgg 263
Query: 64 ctagtttttcttctcaaagaacacaagtccgagtcagagggactcaagttcaaatctttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagtttttcttctcaaagaacacaagtccgagtcagagggactcaagttcaaatctttt 323
Query: 124 cagtgccttggcttcacaaggtttcaaacactgggcttgacacctgggcgattgacagtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtgccttggcttcacaaggtttcaaacactgggcttgacacctgggcgattgacagtc 383
Query: 184 agtgatgattattctcatttctcttttttt-ctttttggttttatttattgtctagtatc 242
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 agtgatgattattcttatttctcttttttttctttttggttttatttattgtctagtatc 443
Query: 243 cagtaccaagtaaatagtaaattccccccacttctgtgttgttaaattgaaaaggaactt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtaccaagtaaatagtaaattccccccacttctgtgttgttaaattgaaaaggaactt 503
Query: 303 catagaagagctgtcttggaatcttagggagagctgcaagatgtaaggagctgcagtcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catagaagagctgtcttggaatcttagggagagctgcaagatgtaaggagctgcagtcct 563
Query: 363 cccctgacagcagttcacagtggttgtcactggccccaccattcactacaacctcgtact 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccctgacagcagttcatagtggttgtcactggccccaccattcactacaacctcgtact 623
Query: 423 gttcacagtattcatagtatttattgaacactataaagtgttaccaagcatagtaccaag 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttcgcagtattcatagtatttattgaacactataaagtgttaccaagcatagtaccaag 683
Query: 483 tactccatgtaattttatggacttcatcatcaaattatccctgtggacaagggctaggta 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tactccatgtaattttatgaacttcatcatcaaattatccctgtggacaagggctaggta 743
Query: 543 tcacatgctatcacatgcttgaccctgtacaaatgaactctgagctggaataaaaaacca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcacatgctatcacatgcttgaccctgtacaaatgaactctgagctggaataaaaaacca 803
Query: 603 ggccggtgacttagtttaagtccttaatcactattaattcctttatctattttactattc 662
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggccagtgacttagtttaagtccttaatcactattaattcctttatctattttactattc 863
Query: 663 tggcctcagttcactcaattaacttatattgacaaattaattgtaaaaagtatttag 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tggcctcagttcactcaattaacttatattgacaaattaattgtaaaaagtatttag 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1120
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1110
Effective search space: 786990
Effective search space used: 786990
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_f13.g1 MSMg01no530_f13.g1 CHROMAT_FILE:
MSMg01no530_f13.g1 PHD_FILE: MSMg01no530_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:38 2005
(659 letters)
>mm_chr3_128182931_128183989
Length = 1059
Score = 1266 bits (655), Expect = 0.0
Identities = 658/659 (99%)
Strand = Plus / Minus
Query: 1 cacactggcataggagacctcaaagcctgtacccacagtgacagagttcttccaacaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cacactggcataggagacctcaaagcctgtacccacagtgacagagttcttccaacaaga 660
Query: 61 ccacacctactccaacaaggcctcatctcctaatagtgccattccctaaggaccaagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccacacctactccaacaaggcctcatctcctaatagtgccattccctaaggaccaagcat 600
Query: 121 tcaaacatacgtttctatggagccaacctattcaaactacctcataaagtctcaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcaaacatacgtttctatggagccaacctattcaaactacctcataaagtctcaaattta 540
Query: 181 aaaatacagtcatataacaatgagcgaatactaaccatcaaattacatctctgtaaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaaatacagtcatataacaatgagcgaatactaaccatcaaattacatctctgtaaacct 480
Query: 241 ttacatggatttagtaatttttaatacaaaaagatgaagaaacattggtctcatacaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttacatggatttagtaatttttaatacaaaaagatgaagaaacattggtctcatacaaaa 420
Query: 301 tataatttacataaatccatcaatatctactatgtttattctaattacatagacttgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tataatttacataaatccatcaatatctactatgtttattctaattacatagacttgtgt 360
Query: 361 aacaaatcaacacaacttcctggtgttaaattaactccaatttgttatgtcagagttcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aacaaatcaacacaacttcctggtgttaaattaactccaatttgttatgtcagagttcta 300
Query: 421 ttggatgggaagttctgtatcaagtcacctggtcctctcttcacggcctcaggaggctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttggatgggaagttctgtatcaagtcacctggtcctctcttcacggcctcaggaggctga 240
Query: 481 aatcagtaagtcaactagattccatctcacctgtggcccaggctcttcttaagtaacttg 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aataagtaagtcaactagattccatctcacctgtggcccaggctcttcttaagtaacttg 180
Query: 541 gctggcagaatttgatcttattgaggttttaccactctggctcttgtggaaacacactgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gctggcagaatttgatcttattgaggttttaccactctggctcttgtggaaacacactgt 120
Query: 601 ttcaaggtatattgaagactatccatgcttcttagcatttctgaatgttccatttctga 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ttcaaggtatattgaagactatccatgcttcttagcatttctgaatgttccatttctga 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
