TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTATCTACCTTATCATCTGAATCTTTCATTTTGCATTTAACTTG
ACTTATTACATTAATAAATGTTTTATCAAGTATTTTATTTGAACTTCTAA
GCTTTCCATATTTTAAAATAATATCTGACTGTTTTATAATATTCCTATTA
TTTCTTCAGTTTTGACAATTGTTCATATAAAAATAAATTGTTATACTACT
GAGGTGTGGTTCCAGCTTTCTGACCTGGGGACATAACTGAGGGCTAAAGC
ATTGTCACATGTGCTTATCATATTGAGTATAAACTCTAGTACTACTAAGA
GAATTGTAGTTACAGAGGCAAGCAGAATTGGACAGGAGGACTGATGTGTA
AATATTGAGATAGTCATTAAAAATAAAGTCCCTTAATGCCAATAACTTGG
ACAAGATCAAGGAATCAGGATAGTATAAAGTGATTTAGAGAATATTACTA
AATCCTAGAATAGGAAAAAAAAAGTGCATAAAGCACCAGTGGGTGTCAGC
CCCACACCACCTTGAGCATGAACTGTGGAAAAGGTCCCACGGTTCCCAGA
GGACTCTCTGCGCTGCAGGTATCCTAGCACACCCAGGATCTTGGGATCAC
AGGTGAGTGGAATGCAACATCTGTGCCAAAACAACCGGGAGGGGCTTGTG
CCAGTAGTAACAGGGATACAGGAAACCTGCCCTACCAGCATCTGGGGTTC
ATTCAGTGACAGCCC

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGG
CTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAA
AGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTC
TGCACTAAACCCGTCTGATCCTGGGCTTTTTTTGGCTGGGAGACTATTTA
TAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACT
TGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCAT
TTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATC
TGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCA
GTTCTGATTTTGTTAATTANGATT

Query= MSMg01no530_i08.b1 MSMg01no530_i08.b1 CHROMAT_FILE:
MSMg01no530_i08.b1 PHD_FILE: MSMg01no530_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:52 2005
         (721 letters)



>mm_chr3_77930100_77931219
          Length = 1120

 Score = 1100 bits (569), Expect = 0.0
 Identities = 661/693 (95%), Gaps = 5/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcatctatctaccttatcatctgaatctttcattttgcatttaacttgacttattac 65
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 690 aattcatctatctaccttatcatctaaatctttcattttgcatttaacttgacttattac 631

                                                                       
Query: 66  attaataaatgttttatcaagtattttatttgaacttctaagctttccatattttaaaat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 630 attaataaatgttttatcaagtattttatttgaacttctaagctttccatattttaaaaa 571

                                                                       
Query: 126 aatatctgactgttttataatattcctattatttcttcagttttgacaattgttcatata 185
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 570 aatatctgactgttttataatatttctattatttcttcagttttgacaattgttcatatg 511

                                                                       
Query: 186 aaaataaattgttatactactgaggtgtggttccagctttctgacctggggacataactg 245
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| 
Sbjct: 510 aaaataaattgttatactactgaggtgtgattccagctttttgacctggggacataactc 451

                                                                       
Query: 246 agggctaaagcattgtcacatgtgcttatcatattgagtataaactctagtactactaag 305
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agagctaaagcattgtcacgtgtgcttatcatattgagtataaactctagtactactaag 391

                                                                       
Query: 306 agaattgtagttacagaggcaagcagaattggacaggaggactgatgtgtaaatattgag 365
           |||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||
Sbjct: 390 agaattgtagctacagaggcaagtagaattggacaggaggactgatgtgtagctattgag 331

                                                                       
Query: 366 atagtcattaaaaataaagtcccttaatgccaataacttggacaagatcaaggaatcagg 425
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 330 atagtcattaaaaatatagtcccttaatgccaataacttggacaggatcaaggaaccagg 271

                                                                       
Query: 426 atagtataaagtgatttagagaatattactaaatcctagaataggaaaaaaaaagtgcat 485
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 270 atagtataaagtgatttagagaatattactaaatcctagaatagg-aaaaaaaagtgcat 212

                                                                       
Query: 486 aaagcaccagtgggtgtcagccccacaccaccttgagcatgaactgtggaaaaggtccca 545
           |||||||||||  |||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 211 aaagcaccagtcagtgtcagccccacatcaccttgagcatgaactctgggaaaggtccca 152

                                                                       
Query: 546 cggttcccagaggactctctgcg--ctgcaggtatcctagcacacccaggatcttgggat 603
           |||| ||||||||||||||  ||  ||||||| |||||||||||||||||||||||||||
Sbjct: 151 cggtccccagaggactctc--cgtactgcaggcatcctagcacacccaggatcttgggat 94

                                                                       
Query: 604 cacaggtgagtggaatgcaacatctgtgccaaaacaaccgggaggggcttgtgccagtag 663
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 93  cacaggtgattggaatgcaacatctgtgccaaaacaacagggaggggcttgtgccagcag 34

                                            
Query: 664 taacagggatacaggaaacctgccctaccagca 696
            ||||||||||||||||||||||||||||||||
Sbjct: 33  gaacagggatacaggaaacctgccctaccagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1120
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1110
Effective search space:   789210
Effective search space used:   789210
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)