Query= MSMg01no530_k05.b1 MSMg01no530_k05.b1 CHROMAT_FILE:
MSMg01no530_k05.b1 PHD_FILE: MSMg01no530_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:01 2005
(676 letters)
>mm_chr3_122128757_122129832
Length = 1076
Score = 1002 bits (518), Expect = 0.0
Identities = 603/672 (89%), Gaps = 64/672 (9%)
Strand = Plus / Plus
Query: 5 gaattccaatcatctctgaccatttcatcatttgctgggtggtggatcgctgtagcaatc 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 gaattccaatcatctctgaccatttcatcatttgctgggtgatggatcgctgtagcaatc 310
Query: 65 atccgacaatttacagtattttttcctggtgtctattgccttcgataacagtcttttccc 124
|||||||||||||||||||
Sbjct: 311 atccgacaatttacagtat----------------------------------------- 329
Query: 125 tttaattttgtcctccccttccataatgctaaaatggctcccatgcctctaacaacctgg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 -----ttttgtcctccccttccataatgctaaaatggctcccatgcctctaacaacctgg 384
Query: 185 gattgtgttcacctgtttggatttgctacccatccagctgaatttctctacagaatcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattgtgttcacctgtttggatttgctacccatccagctgaatttctctacagaatcctg 444
Query: 245 aaagagagagagagagagagagagagagagagagagagagagagagagattgattctcca 304
|||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaag-----------------g-gagagagagagagagagagagagagattgattctcca 486
Query: 305 ctcatacaaggttccactagtaatgcctttagacagtatttaccttttgatatcttgcaa 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctcatacgaggttccactagtaatgcctttagacagtatttaccttttgatatcttgcaa 546
Query: 365 ctgtttccagtttcttgtatctgtcttacctttgtccttctgtctctttttcctcctcag 424
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 547 ctgtttccagtttcttatatctgtcttacctttgtccttctgtctcttttccctcctcag 606
Query: 425 agttaagaatcatggctgcgggaaagtttgcaagccttcccagaaacatgcctgtgaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agttaagaatcatggctgcgggaaagtttgcaagccttcccagaaacatgcctgtgaatc 666
Query: 485 accagttccccttggcctcgtccatggacctcctgagcagcaagtcccctcttgctgagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 accagttccccttggcctcgtccatggacctcctgagcagcaagtcccctcttgctgagc 726
Query: 545 gtcgcacagatgcctatcaagacgtgtctatacatggcactcttccacggaagaaaaagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtcgcacagatgcctatcaagacgtgtctatacatggcactcttccacggaagaaaaagg 786
Query: 605 gccctccttccatacggtcctgtgacaatgccggccactccaaatccccacgacagagct 664
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 787 gccctccttccatacggtcctgtgacaatgctggccactccaaatccccacgacagagct 846
Query: 665 cacctctgaccc 676
||||||||||||
Sbjct: 847 cacctctgaccc 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_k05.g1 MSMg01no530_k05.g1 CHROMAT_FILE:
MSMg01no530_k05.g1 PHD_FILE: MSMg01no530_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:02 2005
(677 letters)
>mm_chr3_122251622_122252699
Length = 1078
Score = 1234 bits (638), Expect = 0.0
Identities = 671/686 (97%), Gaps = 10/686 (1%)
Strand = Plus / Minus
Query: 1 tatgtaagagtacatacagagtagttcaataatataaatgagaaatgttgtgtgttccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tatgtaagagtacatacagagtagttcaataatataaatgagaaatgttgtgtgttccca 863
Query: 61 ttttgttgttgctgtaagaagacttgtgtgtattcattttaactgtcaagacttgaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttttgttgttgctgtaagaagacttgtgtgtattcattttaactgtcaagacttgaaata 803
Query: 121 atgtgatacagttcataattacctgtatttggtaaga-------tttttttcctgcctat 173
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 802 atgtaatatagttcataattacctgtatttggtaagatttcttttttttttcctgcctat 743
Query: 174 tttcatgtttttataaatatgaaatttaagctttgaattttactaatatgtctgtatag- 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 742 tttcatgtttttataaatatgaaatttaagctttgaattttactaatacatctgtataga 683
Query: 233 tttttttttaagttgaagctaaataaaaattgaagttagttgcttcatttataaaaaagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttttttttaagttgaagctaaataaaaattgaagttagttgcttcatttataaaaaagg 623
Query: 293 taaagttaagaaacaacatatctg-aagatgtctcaataatgatttaggctctcttttca 351
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 622 taaagttaagaaacaacatatctgaaag-tgtctcaataatgatttaggctctcttttca 564
Query: 352 gggcccagcactagaagatttcagtcatttgccaccagagcagaggcggaagaagttaca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gggcccagcactagaagatttcagtcatttgccaccagagcagaggcggaagaagttaca 504
Query: 412 gcagcgcattgacgagcttaaccgagggctgcagaaggaagcagaccaaaagtagcgttt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcagcgcattgacgagcttaaccgagggctgcagaaggaagcagaccaaaagtagcgttt 444
Query: 472 ccttgagccctccctcattgctctcccttctggaactaatgagtgctgtgtacactgaca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccttgagccctccctcattgctctcccttctggaactaatgagtgctgtgtacactgaca 384
Query: 532 cagagtgcttccagatcgttggttctgggctggggataagtcagtgggaaaagtgctggc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagagtgcttccagatcgttggttctgggctggggataagtcagtgggaaaagtgctggc 324
Query: 592 ctagcattcatgaggacccgagttcaatcctaccattcccccaaatcatatatcccgatt 651
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 ctagcattcatgaggacccgagttcaatcctatcattcccccaaatcatatatcccgatt 264
Query: 652 gaaacactttttgaaacatttgaaat 677
||||||||||||||||||||||||||
Sbjct: 263 gaaacactttttgaaacatttgaaat 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space: 712356
Effective search space used: 712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
