Query= MSMg01no530_k17.b1 MSMg01no530_k17.b1 CHROMAT_FILE:
MSMg01no530_k17.b1 PHD_FILE: MSMg01no530_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:04 2005
(681 letters)
>mm_chr3_144346376_144347456
Length = 1081
Score = 1265 bits (654), Expect = 0.0
Identities = 672/678 (99%), Gaps = 1/678 (0%)
Strand = Plus / Minus
Query: 4 gcagtaggaaaag-aacactgggcctggcttgagcatctgaatccccaaagcccagcccc 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gcagtaggaaaagaaacactgggcctggcttgagcatctgaatccccaaagcccagcccc 1022
Query: 63 agtaacaaacttcctccaacaaggccacacctactccaacaaggccatgcctcctaattc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agtaacaaacttcctccaacaaggccacacctactccaacaaggccatgcctcctaattc 962
Query: 123 ctgtcacttagtaccactccctcatgagcaagtgttcaaatatatgagtctgcaagggcc 182
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 961 ctgttacttagtaccactccctcatgagcaagtgttcaaatatatgagcctgcaagggcc 902
Query: 183 agtcctattcaaaacaccacagagatctgtctataaaaatcatctcacttcctaaaaaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agtcctattcaaaacaccacagagatctgtctataaaaatcatctcacttcctaaaaaga 842
Query: 243 gaactattataagaggggtgagactttgctcagaaaacagtccagatctgcttctacacg 302
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaactattagaagaggggtgagactttgctcagaaaacagtccagatctgcttctacacg 782
Query: 303 gggaaaaaccaagtgggagagtttgagcttcaaaatgctaaatcatagctcggaaacatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gggaaaaaccaagtgggagagtttgagcttcaaaatgctaaatcatagctcggaaacatg 722
Query: 363 atcaggttagcttggaattgctcaaagcacacataatggcatggtatgttctaaagaaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atcaggttagcttggaattgctcaaagcacacataatggcatggtatgttctaaagaaat 662
Query: 423 ctcattatacgtgcataacaggactaactgtaccccatgaaccttcctaacaaagttcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcattatacgtgcataacaggactaactgtaccccatgaaccttcctaacaaagttcat 602
Query: 483 ttcataatggaaccctggaaaactaaatgaatttaccttcaacacagggtgtttggatat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttcataatggaaccctggaaaactaaatgaatttaccttcaacacagggtgtttggatat 542
Query: 543 aaacgagttacatgcaggatactaaaataatggtgagtttagaacactttctcataaccc 602
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaacgagttacatgcaggattctaaaataatggtgagtttagaacactttctcataaccc 482
Query: 603 attcttttagagagcactagacagcaagtcccgcagaaattaaatatgtggttcatacgg 662
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 481 attcttttagagagcactagacagcaagtcccgcagaacttaaatatgtggttcatacgg 422
Query: 663 caaattattcacgtaagc 680
||||||||||||||||||
Sbjct: 421 caaattattcacgtaagc 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_k17.g1 MSMg01no530_k17.g1 CHROMAT_FILE:
MSMg01no530_k17.g1 PHD_FILE: MSMg01no530_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:04 2005
(684 letters)
>mm_chr3_144158994_144160077
Length = 1084
Score = 1292 bits (668), Expect = 0.0
Identities = 680/684 (99%)
Strand = Plus / Plus
Query: 1 atagtttaaaaaaaaaaatccttctgaattcgagatttatagcgacttggcatagcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtttaaaaaaaaaaatccttctgaattcgagatttatagcgacttggcatagcaata 260
Query: 61 ttagtacaaggaacaaagcttactggagagacacgaccagtaccttgaaagatgccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtacaaggaacaaagcttactggagagacacgaccagtaccttgaaagatgccaact 320
Query: 121 gccatcctgtggaaagtcagattcgatcagactgaaagtttggcccactgttcaaaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatcctgtggaaagtcagattcgatcagactgaaagtttggcccactgttcaaaacca 380
Query: 181 ggcccacaataagcagggagagctacagtggccagccgatcatccacaggtgtcgtaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcccacaataagcagggagagctacagtggccagccgatcatccacaggtgtcgtaaac 440
Query: 241 tgagacagcctgctcttcagtaacagtaccacctctaagtgtttagagaaccgctgttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagacagcctgctcttcagtaacagtaccacctctaagtgtttagagaaccgctgttag 500
Query: 301 cccttaaaagcaatatgaaataggcatctgtattcgtgtgaagttacacgccatctaagc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 cccttaaaagcaatatgaaataggcatctgtactcgtgtgaagttacacgccatctaagc 560
Query: 361 ctcaatctgattctcaatattctttcaaacacctgagcttggaagcacccttactgttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaatctgattctcaatattctttcaaacacctgagcttggaagcacccttactgttta 620
Query: 421 ccactgacaaaatggtcaaaatggtggtgctgccggaaaggactatttccaatcctattg 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ccactgacaaaatggtcaaaatggtggtgctgccgggaaggactatttccaatcctattg 680
Query: 481 aattagtagtatacactggcatctaattttatttcttcattcttcaggtgatgacacgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattagtagtatacactggcatctaattttatttcttcattcttcaggtgatgacacgat 740
Query: 541 attaggtaagtattgattttgtaaaagcttacaaattatattgggggccagggagatggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaggtaagtattgattttgtaaaagcttacaaattatattgggggccagggagatggc 800
Query: 601 tgagggtaaagcctggtgcctggagttctatgcctgaaacccacctggcaaatggggaac 660
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 tgagggtaaagcctggtgcctggagttctatgcctgaaacccacccagcaaatggggaac 860
Query: 661 ctggactcttgggtagctgcacac 684
||||||||||||||||||||||||
Sbjct: 861 ctggactcttgggtagctgcacac 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
