BAC Information

Click to search

BAC

Clone NameMSMg01-530K23
Chromosome3 (Build37)
Map Location 108,563,513 - 108,735,948
singlet/doubletdoublet
Overlap gene4921525H12Rik, Stxbp3a, Fndc7, Prpf38b
Upstream geneLOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2
Downstream gene4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3, Ntng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K23.T7 (MSMg01no530_k23.b1)MSMg01-530K23.TJ (MSMg01no530_k23.g1)
ACCAG599264AG599265
length761781
length of high quality
(start - end)		686 (76 - 761)574 (80 - 653)
definitionCHROMAT_FILE: MSMg01no530_k23.b1 PHD_FILE: MSMg01no530_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:05 2005CHROMAT_FILE: MSMg01no530_k23.g1 PHD_FILE: MSMg01no530_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,735,598 - 108,735,948)(108,563,513 - 108,564,086)
sequence
NAAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGC
GGAATTCTGCCCATTTTCCACAACAAAACTGTGACTTTTTGTGAAATGTT
TAGGAAAATGGATGGACTTGGGAAGTCATATTAACTGAGGTGACCCGAAC
TCAGGAAGAAAAACATATACACATACAACACATGCACACCCATGCTTTCC
CTCATATGTGGCTTTAAAGTATACATGTATATATGAAAATATATACTCTC
CGTGCTGGAATGCTGACAGGCTTGATCGCCTTTCCTCTAGGCACCCACAG
CTGCTAGTAGTTCATTCAGCTGTCCTGTTGTGTCTGAAGACAACCTGTCC
TGCCCTGCTCTGACTCCCATGATCTTTCTGCCCCTCTTCCACAGTGTTCC
CTAAGACTGTGTGATATAGATGTCCATTTACAGCAGAGCACTTCATAGAC
ACTTGCTTTCTACATTTGGACCTGTGAGTCTCTGTATTAACCATGGTCTA
CTACAGTAAGAGCCTTCTCTAAGGGCTAAGGGCTGCACTAGTCTTTGGGT
ATAGAGATATGTAGTTAGAAGGCAATTTGAAACTATGTCCATTTAGCTAA
TAATAGTAATGTGTATTATGAATGGAAAGCAGGAGCTACCACCAAGATAT
TGCAAGATGTCGACTGTTTATTTACAGCCAAGCCAAGCTTACAGTCTCCC
TTGGTAGGATTATGAAGCATCTAAGACCAGAAGCAGAAAGGCCTTTTATG
GCAAACGAGGT

NNNAACCATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGGCTACATG
AGGCTCCATTTCAGGTAAGGAAATGAAAACCAGCATGTATCTCAGCAACA
GTGTGCCTAGTAACCTAGCATTCACAAAGCTCTAGCAACACACATAACAC
ACATACATACACACAAATTAATATGCAAAAAGTAATTTTTGGATCTGATG
TGTCTTGCTCATCAGAATAAATACGATGTGTTTGCATTTTTTACATATTA
ACAGAAGAATCTGGAGTCAAGACATGCGTCTACCTGCATAAATCCCTTTC
CCTGGTATTTACAGAATACAATCTTGTCTTCCGTTGCGTAGAAACATAAA
CTTCCCCCTGAATGTATTTCCTATATCTCCATGTCCTTTTCCCCTTCAGT
TACGATCTATTGTCCAGGCACATCCTTGAGCCCCCAACTTTACATTACCT
GGGGGCTGCTCTCTGCTCAATATTGTTCCTGCTGGGGCTTGCATCCAGGG
CCGTCTGTAGGCTAAGCGTGGTGGCTGGAAGGAGACTGTCTTCCATAGGT
TCATGTATTGGAGCACTTGGTCCCCAGATCATGCCTCCGTTTCTCTGTTT
GGGGAGATTTATGAGGTGTGGCCTTGCTGGAGGAAGGGTGTCACTGGGGG
CAGGCTTTGAGAATTTAAGACTTGTGGTATCCCACGTTCCCCTTTTGTTG
TTGTTGATGCTCTGGCTGCAACGATTGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k23.b1 MSMg01no530_k23.b1 CHROMAT_FILE:
MSMg01no530_k23.b1 PHD_FILE: MSMg01no530_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:05 2005
         (686 letters)



>mm_chr3_108734863_108735948
          Length = 1086

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Minus

                                                                        
Query: 336  gtgatatagatgtccatttacagcagagcacttcatagacacttgctttctacatttgga 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 gtgatatagatgtccatttacagcagagcacttcatagacacttgctttctacatttgga 1027

                                                                        
Query: 396  cctgtgagtctctgtattaaccatggtctactacagtaagagccttctctaagggctaag 455
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 cctatgagtctctgtattaaccatggtctactacagtaagagccttctctaagggctaag 967

                                                                        
Query: 456  ggctgcactagtctttgggtatagagatatgtagttagaaggcaatttgaaactatgtcc 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  ggctgcactagtctttgggtatagagatatgtagttagaaggcaatttgaaactatgtcc 907

                                                                        
Query: 516  atttagctaataatagtaatgtgtattatgaatggaaagcaggagctaccaccaagatat 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  atttagctaataatagtaatgtgtattatgaatggaaagcaggagctaccaccaagatat 847

                                                                        
Query: 576  tgcaagatgtcgactgtttatttacagccaagccaagcttacagtctcccttggtaggat 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 846  tgcaagatgtcgactgtttatttacagccaagccaagcttacagtctcccttggtaggag 787

                                                               
Query: 636  tatgaagcatctaagaccagaagcagaaaggccttttatggcaaacgaggt 686
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  tatgaagcatctaagaccagaagcagaaaggccttttatggcaaacgaggt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_k23.g1 MSMg01no530_k23.g1 CHROMAT_FILE:
MSMg01no530_k23.g1 PHD_FILE: MSMg01no530_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:05 2005
         (574 letters)



>mm_chr3_108563313_108564286
          Length = 974

 Score = 1079 bits (558), Expect = 0.0
 Identities = 570/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcctgggctacatgaggctccatttcaggtaaggaaatgaaaaccagcatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagcctgggctacatgaggctccatttcaggtaaggaaatgaaaaccagcatgta 260

                                                                       
Query: 61  tctcagcaacagtgtgcctagtaacctagcattcacaaagctctagcaacacacataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagcaacagtgtgcctagtaacctagcattcacaaagctctagcaacacacataaca 320

                                                                       
Query: 121 cacatacatacacacaaattaatatgcaaaaagtaatttttggatctgatgtgtcttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatacatacacacaaattaatatgcaaaaagtaatttttggatctgatgtgtcttgct 380

                                                                       
Query: 181 catcagaataaatacgatgtgtttgcattttttacatattaacagaagaatctggagtca 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcagaataaatatgatgtgtttgcattttttacatattaacagaagaatctggagtca 440

                                                                       
Query: 241 agacatgcgtctacctgcataaatccctttccctggtatttacagaatacaatcttgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacatgcgtctacctgcataaatccctttccctggtatttacagaatacaatcttgtct 500

                                                                       
Query: 301 tccgttgcgtagaaacataaacttccccctgaatgtatttcctatatctccatgtccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccgttgcgtagaaacataaacttccccctgaatgtatttcctatatctccatgtccttt 560

                                                                       
Query: 361 tccccttcagttacgatctattgtccaggcacatccttgagcccccaactttacattacc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tccccttcagttacgatctattgtccaggcacatccttgagcccccgactttacattacc 620

                                                                       
Query: 421 tgggggctgctctctgctcaatattgttcctgctggggcttgcatccagggccgtctgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggggctgctctctgctcaatattgttcctgctggggcttgcatccagggccgtctgta 680

                                                                       
Query: 481 ggctaagcgtggtggctggaaggagactgtcttccataggttcatgtattggagcacttg 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ggctaagcgtggtggctggaaggagactgtcttccacaggttcatgtattggagcacttg 740

                                             
Query: 541 gtccccagatcatgcctccgtttctctgtttggg 574
           ||||||||||| ||||||||||||||||||||||
Sbjct: 741 gtccccagatcgtgcctccgtttctctgtttggg 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |