BAC Information

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BAC

Clone NameMSMg01-530P17
Chromosome3 (Build37)
Map Location 105,342,278 - 105,517,587
singlet/doubletdoublet
Overlap geneKcnd3, Ddx20, 6530418L21Rik
Upstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneRap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530P17.T7 (MSMg01no530_p17.b1)MSMg01-530P17.TJ (MSMg01no530_p17.g1)
ACCAG599492AG599493
length755754
length of high quality
(start - end)		647 (53 - 699)656 (82 - 737)
definitionCHROMAT_FILE: MSMg01no530_p17.b1 PHD_FILE: MSMg01no530_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:29 2005CHROMAT_FILE: MSMg01no530_p17.g1 PHD_FILE: MSMg01no530_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,516,945 - 105,517,587)(105,342,278 - 105,342,933)
sequence
NNTTTTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCCTGCCTTCTCTGCCTCGCTGGCTCTGTCATGCCAG
AAGCAGGGATTCCGGGGTCAGTTCCCCTAACCTCACGTCCTAGGTACCAT
CTGGAGGGGCCGAGGGACTGACTTTACTTGGGTGAGGGCCCCCACTTGGA
GGCTGGAGAGGAGAGGCTGCTCCTGATAACATTCACAAAGTTCCTAGCCC
CTGCCCAAGCTGCCTTGGGCCTGCCAGCTCCCTCCCTACATCCTGATCAA
ATTACTCACAGTGAGCCTCTGTGCGGGAACCATCTGTTTTTTAAGCCCCC
CAGAGACCCACAGGATCATCTTACCTCCCAGGCTTGTCTTAATGCCCAGA
GCTAACTCCAAGGCATGCTGGGGTGGGGGACTGAGGGACACAGAAGCACT
GCAGTGTGGGCTGTCAGTTGGCCCTCTCTGGCTTCTAAGTTAAATCTCCT
GCCAACCCTGGCCTGGTAGGGAGAGATCTATCCAAGCTCCCTTGAGCCAG
CAGCACTAAAGGTCAGTGGAGGACTGTCAGCCCCCGAGGGCCGGGAGGCC
TTTTCTGGGCTGCTGCCCTTGCTTTGTGCATTCTCCTGAGACAGGGAGAG
AAATGACACAGGCTAACAGCTCTGGGATTTGCTGGGGGCACATATGAGCC
ACTTGAGTGGCAGGAGACAAAGAACCCATGGAGTAGCTGTGCCCATCACT
GGTGG

NTTTTTCCTTAATTTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTCTTGGACTTGGAAG
GAGGCTCCTGCAGGCACCAGAGAAGGCTCAGAGCCTCCGAGTGCAGAACC
TAGGAGAGGGCTGCTTAGTGGTCAGTCAGCGAGACAGAGCTGGGAGCAAT
TGAGCATTTGCCCTAGCATGCTGGAGTAATGACCCCTCAGAAAGATTCCA
AGTTTGGAAGGGCAGGGCAGACTTGAGTGGTTGGAAATTGAGGTTAATGG
CCAGCCAGCCTGGAAGATGTGCTCTGCGTGTCCCATCTCACACCCTCCAA
AGACACATGAAAGGGGTTTAGCACACCAGAGCCAGTAAATTGTTTGTTTG
CCTGAATTCACCAGGTAATTGCATGTTCCTCTGCTGGCTTCTGCTGCCTG
CATTGGGCTTTTTAGAGAGATAAGCAAAGGCAAAATGAGGGTTCTGGTCT
CCTGAGGCTCTTATGCTCCGAGTTACACGACAAGAGATGCAGAAGGAAGG
GCCAAGGCAGAGGCTCATGCAAATGAGCGTGATGGGAAATGGAGGAGGGG
CTGAAGGAGGAGCACCCGATGGATCTGAGGAACCCTCGGCCTGACATTCT
TTTGGGATATTGACAATGCCAGGCGACAGGTTCCATCTAAGATAATTCTG
AGCACTCAAGTCTTATCCAAATATGTCCATAGCTACAAGCAGCCTGTACT
TGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_p17.b1 MSMg01no530_p17.b1 CHROMAT_FILE:
MSMg01no530_p17.b1 PHD_FILE: MSMg01no530_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:29 2005
         (647 letters)



>mm_chr3_105516741_105517787
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctgccttctctgcctcgctggctctgtcatgccagaagcagggattccggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gaattcttcctgccttctctgcctcgctggctctgtcatgccagaagcagggattccggg 788

                                                                       
Query: 65  gtcagttcccctaacctcacgtcctaggtaccatctggaggggccgagggactgacttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtcagttcccctaacctcacgtcctaggtaccatctggaggggccgagggactgacttta 728

                                                                       
Query: 125 cttgggtgagggcccccacttggaggctggagaggagaggctgctcctgataacattcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cttgggtgagggcccccacttggaggctggagaggagaggctgctcctgataacattcac 668

                                                                       
Query: 185 aaagttcctagcccctgcccaagctgccttgggcctgccagctccctccctacatcctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaagttcctagcccctgcccaagctgccttgggcctgccagctccctccctacatcctga 608

                                                                       
Query: 245 tcaaattactcacagtgagcctctgtgcgggaaccatctgttttttaagccccccagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tcaaattactcacagtgagcctctgtgcgggaaccatctgttttttaagccccccagaga 548

                                                                       
Query: 305 cccacaggatcatcttacctcccaggcttgtcttaatgcccagagctaactccaaggcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cccacaggatcatcttacctcccaggcttgtcttaatgcccagagctaactccaaggcat 488

                                                                       
Query: 365 gctggggtgggggactgagggacacagaagcactgcagtgtgggctgtcagttggccctc 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gctggggtgggggactgggggacacagaagcactgcagtgtgggctgtcagttggccctc 428

                                                                       
Query: 425 tctggcttctaagttaaatctcctgccaaccctggcctggtagggagagatctatccaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctggcttctaagttaaatctcctgccaaccctggcctggtagggagagatctatccaag 368

                                                                       
Query: 485 ctcccttgagccagcagcactaaaggtcagtggaggactgtcagcccccgagggccggga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcccttgagccagcagcactaaaggtcagtggaggactgtcagcccccgagggccggga 308

                                                                       
Query: 545 ggccttttctgggctgctgcccttgctttgtgcattctcctgagacagggagagaaatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggccttttctgggctgctgcccttgctttgtgcattctcctgagacagggagagaaatga 248

                                                      
Query: 605 cacaggctaacagctctgggatttgctgggggcacatatgagc 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacaggctaacagctctgggatttgctgggggcacatatgagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_p17.g1 MSMg01no530_p17.g1 CHROMAT_FILE:
MSMg01no530_p17.g1 PHD_FILE: MSMg01no530_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:29 2005
         (656 letters)



>mm_chr3_105342078_105343133
          Length = 1056

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactcttggacttggaaggaggctcctgcaggcaccagagaaggctcagagcctccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactcttggacttggaaggaggctcctgcaggcaccagagaaggctcagagcctccgag 260

                                                                       
Query: 61  tgcagaacctaggagagggctgcttagtggtcagtcagcgagacagagctgggagcaatt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagaacctaggagggggctgcttagtggtcagtcagcgagacagagctgggagcaatt 320

                                                                       
Query: 121 gagcatttgccctagcatgctggagtaatgacccctcagaaagattccaagtttggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcatttgccctagcatgctggagtaatgacccctcagaaagattccaagtttggaagg 380

                                                                       
Query: 181 gcagggcagacttgagtggttggaaattgaggttaatggccagccagcctggaagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggcagacttgagtggttggaaattgaggttaatggccagccagcctggaagatgtg 440

                                                                       
Query: 241 ctctgcgtgtcccatctcacaccctccaaagacacatgaaaggggtttagcacaccagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgcgtgtcccatctcacaccctccaaagacacatgaaaggggtttagcacaccagag 500

                                                                       
Query: 301 ccagtaaattgtttgtttgcctgaattcaccaggtaattgcatgttcctctgctggcttc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtaaattgtttatttgcctgaattcaccaggtaattgcatgttcctctgctggcttc 560

                                                                       
Query: 361 tgctgcctgcattgggctttttagagagataagcaaaggcaaaatgagggttctggtctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgcctgcattgggctttttagagagataagcaaaggcaaaatgagggttctggtctc 620

                                                                       
Query: 421 ctgaggctcttatgctccgagttacacgacaagagatgcagaaggaagggccaaggcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaggctcttatgctccgagttacacgacaagagatgcagaaggaagggccaaggcaga 680

                                                                       
Query: 481 ggctcatgcaaatgagcgtgatgggaaatggaggaggggctgaaggaggagcacccgatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctcatgcaaatgagcgtgatgggaaatggaggaggggctgaaggaggagcacccgatg 740

                                                                       
Query: 541 gatctgaggaaccctcggcctgacattcttttgggatattgacaatgccaggcgacaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatctgaggaaccctcggcctgacattcttttgggatattgacaatgccaggcgacaggt 800

                                                                   
Query: 601 tccatctaagataattctgagcactcaagtcttatccaaatatgtccatagctaca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccatctaagataattctgagcactcaagtcttatccaaatatgtccatagctaca 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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