Query= MSMg01no531_d24.b1 MSMg01no531_d24.b1 CHROMAT_FILE:
MSMg01no531_d24.b1 PHD_FILE: MSMg01no531_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
(654 letters)
>mm_chr3_19671302_19672356
Length = 1055
Score = 1205 bits (623), Expect = 0.0
Identities = 644/651 (98%), Gaps = 1/651 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgaagaataa-tacagttaaaaacacatattctcacaaaatgttaaaaataac 63
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaggaataaatacagttaaaaacacatattctcacaaaatgttaaaaataac 264
Query: 64 tgtgaaaagctcttgacttagtcagaaataagcaaggtagtatcagatgtgtgttcagtg 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 tgtgaaaagctcttgacttagtcagaaataagcaaggtagcatcagatgtgtgttcagtg 324
Query: 124 gtaaagtagtggcatgaccctttttgagttaaacactactttctgattggattcaaggtc 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaaagtagtggcatgaccctttgtgagttaaacactactttctgattggattcaaggtc 384
Query: 184 cactctgtgggagaaaatacctatgttatacagtacatctggtccaaagcttacagctgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactctgtgggagaaaatacctatgttatacagtacatctggtccaaagcttacagctgt 444
Query: 244 aggccctacttaggcctagaaaggaaccctactactgttgtttgccatatagatgtgctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggccctacttaggcctagaaaggaaccctactactgttgtttgccatatagatgtgctg 504
Query: 304 tccaatactcttctaaatatttatttttatacccatacattattgctgctctcaccttgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccaatactcttctaaatatttatttttatacccatacattattgctgctctcaccttgg 564
Query: 364 ttagagaagcttcttttggcaaggagtaatgggtgaagcaaagacttagaactggtcaat 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 ttagagaagcttcttttggcaaggagtaatgggtgaagcgaagacttagaactggtcaat 624
Query: 424 gtcctgagaataagttcagttctcagtcccaaatgggaccttttatgtcagcttcttcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcctgagaataagttcagttctcagtcccaaatgggaccttttatgtcagcttcttcaa 684
Query: 484 gacccagggaattatgacaggagaggaggcagaaatactgtaagaagaagtactatgggc 543
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 gacccagggaattatgacaggagaggaggtagaaatactgtaagaagaagtactatgggc 744
Query: 544 tgttctctggtggatgtaacttgattatggcagtcatgatcacacagcagctgtggacac 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctctctggtggatgtaacttgattatggcagtcatgatcacacagcagctgtggacac 804
Query: 604 ctgcacaataactgcacagacacttggacattcaacattttatcatctggg 654
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgcacaataactgcacagacacttggacattcaacattttatcatctggg 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_d24.g1 MSMg01no531_d24.g1 CHROMAT_FILE:
MSMg01no531_d24.g1 PHD_FILE: MSMg01no531_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
(510 letters)
>mm_chr3_19765509_19766422
Length = 914
Score = 944 bits (488), Expect = 0.0
Identities = 506/514 (98%), Gaps = 4/514 (0%)
Strand = Plus / Minus
Query: 1 agtggcttcatcttgagac----tttttttttctttaagatggagcttggctgcctgctt 56
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 656 agtggcttcatcttgagactttttttttttttctttaaaatggagcttggctgcctgctt 597
Query: 57 ctgaagatattggaaatgggcccttactgctaagagtgtctagagatagagtatggctac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 596 ctgaagatattggaaatgggcccttactgctaagagtgtctagagatagagtatggccac 537
Query: 117 tgtgtgccttcagtggcttaaactgagttgtatgctaggcttaggagaaaacaggatgat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgtgtgccttcagtggcttaaactgagttgtatgctaggcttaggagaaaacaggatgat 477
Query: 177 gtaattaatatgacttgtatcttcttattatgccatgggtttcagaaaggatatttttat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtaattaatatgacttgtatcttcttattatgccatgggtttcagaaaggatatttttat 417
Query: 237 ttgtcattatggctaatacagctattacatattataaatagtaaatagttataaacttat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttgtcattatggctaatacagctattacatattataaatagtaaatagttataaacttat 357
Query: 297 tgattttgtgtatgttcaatggttcctggaaaatgtgtcaattaatggattttagaattt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgattttgtgtatgttcaatggttcctggaaaatgtgtcaattaatggattttagaattt 297
Query: 357 aggatcaaattcagggtcttctgcatcctaggtgggtgttccataattgactatgcccaa 416
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 296 aggatcaaattcagggtcttctgcatcctatgtgggtgttctataattgactatgcccaa 237
Query: 417 accaataaaaatattttgagtgctggaaagatgactcagaagacccaggcttgattccca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 accaataaaaatattttgagtgctggaaagatgactcagaagacccaggcttgattccca 177
Query: 477 gcacctacatggtggctcacaatcttttgtaact 510
||||||||||||||||||||||||||||||||||
Sbjct: 176 gcacctacatggtggctcacaatcttttgtaact 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 914
Length adjustment: 10
Effective length of query: 500
Effective length of database: 904
Effective search space: 452000
Effective search space used: 452000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
