Query= MSMg01no531_g15.b1 MSMg01no531_g15.b1 CHROMAT_FILE:
MSMg01no531_g15.b1 PHD_FILE: MSMg01no531_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:01 2005
(469 letters)
>mm_chr3_60436686_60437555
Length = 870
Score = 806 bits (417), Expect = 0.0
Identities = 455/471 (96%), Gaps = 8/471 (1%)
Strand = Plus / Plus
Query: 4 ggaattcatcagta----ttaccaaaatcctgaactggggagatagctcagtggatgaaa 59
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcatcagtaaaaat---caaaatcctgaactggggagatagctcagtggatgaaa 259
Query: 60 ttcttgccatacaaacattacaactggagtttagatccccagaacacataaatattcagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcttgccatacaaacattacaactggagtttagatccccagaacacataaatattcagg 319
Query: 120 gagtgttgaaagacttagaaccccatcactggtcatactctgtgcttaagaaggccagta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagtgttgaaagacttagaaccccatcactggtcatactctgtgcttaagaaggccagta 379
Query: 180 aggcagaacctaaacttcagtcaccctctgagtgcagggaaggcactgagactaaaacca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggcagaacctaaacttcagtcaccctctgagtgcagggaaggcactgagactaaaacca 439
Query: 240 acaccaccaccaccaaca-ccactacaagagtcaaggagtgtccaaagccatgtccaaag 298
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaccaccaacaacaacagccactacaagagtcaaggagtgtccaaagccatgtccaaag 499
Query: 299 ccaatgtcctcgcaagtctctatggctctctgccttctgtagcaattctttatctacagt 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 ccaatgtcctcgcaagtctctatggctctctgccttctgtagcaattccttatctacagt 559
Query: 359 ctactcaagatcagtgtatcaaggtgcctgaatcttcttaccctttctcttccttgctag 418
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct: 560 ctactcaagatcagtgtagcaaggtgcctgagccttcttaccctttctcttccttgttag 619
Query: 419 cctttcacctcttcaaatcacatagcttctctcatgacagatattctattg 469
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 cctttcacctcttcaaatcacatagcttctctcatgacagaaattctattg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space: 394740
Effective search space used: 394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_g15.g1 MSMg01no531_g15.g1 CHROMAT_FILE:
MSMg01no531_g15.g1 PHD_FILE: MSMg01no531_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:01 2005
(392 letters)
>mm_chr3_60591137_60591928
Length = 792
Score = 518 bits (268), Expect = e-151
Identities = 297/316 (93%), Gaps = 16/316 (5%)
Strand = Plus / Minus
Query: 1 tgtctccactgttaatatttgccaatagagttcctgaaagatggaaaagatgcacttaat 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtctccattgttaatatttgccaatagagttcctgaaagatggaaaagatgcacttaat 241
Query: 61 acataggaatatgccagttgttagtctatgcactggctagtttgttttgttttgttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acataggaatatgccagttgttagtctatgcactggctagtttgttttgttttgtt---- 185
Query: 121 tttgtttcgttttgttttttgtttgcttttgttgttttgttttgtcttttgttttttgtc 180
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ---------ttttg---tttgtttgcttttgttgttttgttttgtcttttgttttttgtc 137
Query: 181 aacttggcacaagcacaattcatcatggaagaaggaacctcatttgagaaggtcctttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 136 aacttggcacaagcacaattcatcatggaagaaggaacctcatttgagaaggtccattca 77
Query: 241 tcatcttggcatataaacaagtctatacaacattttcttaatccatgaatgatgagggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcatcttggcatataaacaagtctatacaacattttcttaatccatgaatgatgagggag 17
Query: 301 gacccagcccactggt 316
||||||||||||||||
Sbjct: 16 gacccagcccactggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
