Query= MSMg01no531_l21.b1 MSMg01no531_l21.b1 CHROMAT_FILE:
MSMg01no531_l21.b1 PHD_FILE: MSMg01no531_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:28 2005
(714 letters)
>mm_chr3_119758136_119759249
Length = 1114
Score = 1365 bits (706), Expect = 0.0
Identities = 709/710 (99%)
Strand = Plus / Minus
Query: 5 gaattccccatcaaattctatgctctgaagaagaatatgtctctctgattgtattttcta 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 914 gaattccccatcaaattctatgctctgaagaagaatatgtctctctggttgtattttcta 855
Query: 65 atttccccacacaaatctaaacaactccataagacaagacactggtggtcataagagctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atttccccacacaaatctaaacaactccataagacaagacactggtggtcataagagctc 795
Query: 125 agttgccagcttctgcaaacagcctgaatgcaaatcacactctctggaatagccatccat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agttgccagcttctgcaaacagcctgaatgcaaatcacactctctggaatagccatccat 735
Query: 185 ccctgctggaggcatggcccagttaattaaagtaccgggatatgaatgaacacagggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccctgctggaggcatggcccagttaattaaagtaccgggatatgaatgaacacagggaaa 675
Query: 245 ctgatcaatgagacaggaaactctagcgtgaaacctaggatctttttttttctctccttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctgatcaatgagacaggaaactctagcgtgaaacctaggatctttttttttctctccttt 615
Query: 305 cctatctctttctttcatctaaagaagagattcctagcacaaaactcaatccaaatgtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cctatctctttctttcatctaaagaagagattcctagcacaaaactcaatccaaatgtga 555
Query: 365 attaatatcaccaatacaaaaaaatttccctggacttgtactgaattcggtgatgaaggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attaatatcaccaatacaaaaaaatttccctggacttgtactgaattcggtgatgaaggc 495
Query: 425 agcacacaattattttcgattggaccaatgagagcatgcggggaagtctctgaagactgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agcacacaattattttcgattggaccaatgagagcatgcggggaagtctctgaagactgt 435
Query: 485 ctgctcagtgccagttgttaatgaatcccatttgtctttcttgattaagtctgctattac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgctcagtgccagttgttaatgaatcccatttgtctttcttgattaagtctgctattac 375
Query: 545 ccccgtttagtcctgtcaccagccctttagcaaggattttcatatcactgtttagatgag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccccgtttagtcctgtcaccagccctttagcaaggattttcatatcactgtttagatgag 315
Query: 605 aaattagcctacgtgagcagcactcatccatcagaaggccgtttatttaatacagtttac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaattagcctacgtgagcagcactcatccatcagaaggccgtttatttaatacagtttac 255
Query: 665 agtttatgagttcaaaaactgtagcctcatacataggagatggatcactg 714
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agtttatgagttcaaaaactgtagcctcatacataggagatggatcactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no531_l21.g1 MSMg01no531_l21.g1 CHROMAT_FILE:
MSMg01no531_l21.g1 PHD_FILE: MSMg01no531_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:28 2005
(691 letters)
>mm_chr3_119623635_119624725
Length = 1091
Score = 1282 bits (663), Expect = 0.0
Identities = 683/691 (98%), Gaps = 4/691 (0%)
Strand = Plus / Plus
Query: 1 aatgtccattactacccatagatacagacacacaaagagtgatctggtatggttaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aatgtccattactacccatagatacagacacacaaagagtgatctggtatggttaagaat 264
Query: 61 tcccaagcctttaggagtttgtgtgtgtgtgtgtgtgtgtgttggaaggatacaatgaaa 120
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 265 tcccaagcctttaggagttt---t-tgcgtgtgtgtgtgtgttggaaggatacaatgaaa 320
Query: 121 gcttgcttatggaattaagtaatgattgaatcatagggataggctgagcaaagtgaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgcttatggaattaagtaatgattgaatcatagggataggctgagcaaagtgaagaa 380
Query: 181 atgttacttgtgataggctaggcttggctgttattcttacaacaaatttgtttgtattgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttacttgtgataggctaggcttggctgttattcttacaacaaatttgtttgtattgg 440
Query: 241 tttagtatctcaagcatgcctctgctgctagacccagcatcttttccatattatacttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagtatctcaagcatgcctctgctgctagacccagcatcttttccatattatacttgt 500
Query: 301 agacacagacataaatataacccatgaatatgaatagctaataaaatatctggagtcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacacagacataaatataacccatgaatatgaatagctaataaaatatctggagtcaga 560
Query: 361 gcaatgggatctagactagaatccaattttctcactgtctagccattcaggcatttggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatgggatctagactagaatccaattttctcactgtctagccattcaggcatttggtc 620
Query: 421 ttttcatcaactcattgttaatgggctgtaagcaatacaaggagtctggggaaattgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcatcaactcattgttaatgggctgtaagcaatacaaggagtctggggaaattgagg 680
Query: 481 atagagcactaaagcaaaataatcccgggctcagtgagagtgcaaatcattttagaggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagagcactaaagcaaaataatcccgggctcagtgagagtgcaaatcattttagaggca 740
Query: 541 gaaattttgaagacagaaacaaacacaaaagagaggcttgattctgcagggctccaaaat 600
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 741 gaaattttgaagacagaaacaaacacaaaagaggggcttgattctgcagggccccaaaat 800
Query: 601 ggagaagatgcagttttctaggtttaggaaggccatacagagtcttatgtgtactgagtg 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 ggagaagatgcagttttctaggtttaagaaggccatacagagtcttatgtgtactgagtg 860
Query: 661 cattgctttgctatggtttggatgtaaaatg 691
|||||||||||||||||||||||||||||||
Sbjct: 861 cattgctttgctatggtttggatgtaaaatg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
