Query= MSMg01no531_n18.b1 MSMg01no531_n18.b1 CHROMAT_FILE:
MSMg01no531_n18.b1 PHD_FILE: MSMg01no531_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:37 2005
(662 letters)
>mm_chr3_82846560_82847621
Length = 1062
Score = 1220 bits (631), Expect = 0.0
Identities = 646/651 (99%)
Strand = Plus / Plus
Query: 12 gaattcttttactgttcctgtagtatgagagacgctgagatatggaatgatggcttccgt 71
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcttttactgatactgtagtatgagagacgctgagatatggaatgatggcttccgt 271
Query: 72 agatgcgttagtgaatgaaaacacagatgtgtatatagagacacaaaactcagagttgtg 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agatgcgttagtgaatgaaaacacagatgtgtatatagagacacaaaactcagagttgtg 331
Query: 132 ctatagatacaggtctatctttgggtagctgtcttagggtaaattcgtatctctaaactt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctatagatacaggtctatctttgggtagctgtcttagggtaaattcgtatctctaaactt 391
Query: 192 catctgaaagatgaaactaaccatgtctgtcttatagctgggatgcttcccgttgatacg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 catctgaaagatgaaactaaccatgtctgtcttatagctgggatgcttcccgttgatacg 451
Query: 252 taaggagttcaggatgggggctgcctgatacacttgaagtgtccaagtctgggcagttgt 311
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taaggagttcgggatgggggctgcctgatacacttgaagtgtccaagtctgggcagttgt 511
Query: 312 ttagaacattcggtacccccacagtgctagacaatcgcattcgtggggtcattcaagaca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttagaacattcggtacccccacagtgctagacaatcgcattcgtggggtcattcaagaca 571
Query: 372 ggagctaagaccttggtgcttaccagccgtcgttgtccctgtcgtacgtgctgaagaaca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggagctaagaccttggtgcttaccagccgtcgttgtccctgtcgtacgtgctgaagaaca 631
Query: 432 tgccgttgtggatggtcatggttctgttctcccccaccaattgagaggccccgtccatga 491
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 632 tgccgttgtggatggtcatggttctgttctcccccaccagttgagaggccccgtccatga 691
Query: 492 gagcgttgccagccgtccctttgtatttgttcactgagacttggtatttgctggcctcgt 551
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gggcgttgccagccgtccctttgtatttgttcactgagacttggtatttgctggcctcgt 751
Query: 552 tctgtaccgtgaagcctccataatgtgccttcaccttgtctcctttccagtcctccattt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tctgtaccgtgaagcctccataatgtgccttcaccttgtctcctttccagtcctccattt 811
Query: 612 caatgagaagttctgtgggtcccatcctggtgagctggctaatcttatcat 662
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 caatgagaagttctgtgggtcccatcctggtgagctggctaatcttatcat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_n18.g1 MSMg01no531_n18.g1 CHROMAT_FILE:
MSMg01no531_n18.g1 PHD_FILE: MSMg01no531_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:38 2005
(598 letters)
>mm_chr3_82976318_82977311
Length = 994
Score = 1044 bits (540), Expect = 0.0
Identities = 582/598 (97%), Gaps = 4/598 (0%)
Strand = Plus / Minus
Query: 1 caggacagtagggctacacagagaaaccctgtctctaaaaacaaaaacaaaacaaagtaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 caggacagtagggctatacagagaaaccctgtctctaaaaacaaaaacaaaacaaagtaa 781
Query: 61 acattgatgcattttcttaataatttaaattagtaaacagaaaaggaaaactacataaca 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 780 acattgatgcattctcttaataatttaaattagtaaacagaaaaggaaaactacttaaca 721
Query: 121 caaaaaataggtaattgcagagaatcagagcaacactatttcaaactgaaatactttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 caaaaaataggtaattgcagagaatcagagcaacactatttcaaactgaaatactttcat 661
Query: 181 ttagaacagtttctttgctgaaactctaaatagaacttcctctttaaagaacaaaaacag 240
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 660 ttagaacggtttctttgctgaaactctaaatagaacttcctgtttaaagaacaaaaacag 601
Query: 241 ccccatatttcctaaaaatggaattttcattatagaatcaagttacttgattcataaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccccatatttcctaaaaatggaattttcattatagaatcaagttacttgattcataaact 541
Query: 301 ccctaggtagaagccccaggcttccaaaggacaaactggaaaactggaaaacctgtcata 360
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 540 ccctaggtaaaagccccaggcttccaaaggacaaactggaaaactggaaaagctgtcata 481
Query: 361 atagtagccctccaagcctcaattccatgaactagcatgttggtttttacactcttaagt 420
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 480 gtagtagccctccaagcctcaattccgtgaattagcatgttggtttttacactcttaagt 421
Query: 421 gttccacagcctccacattagaagctttgccttgtttcttctgaagttcaaaccatgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gttccacagcctccacattagaagctttgccttgtttcttctgaagttcaaaccatgatg 361
Query: 481 cttgggggatcaggtcaggcctgagtctatcaactcgattttgatataagctaccatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 cttgggggatcaggtcaggcctgagtctatcaactcgattttgatataaactaccatttt 301
Query: 541 tttttttgcccacattggattaaaccgggaaatttgcatttgaatagatgttaaagga 598
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 300 ttt----gcccacattggattaaatcgggaaatttgcatttgaatagatgttaaagga 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 994
Length adjustment: 10
Effective length of query: 588
Effective length of database: 984
Effective search space: 578592
Effective search space used: 578592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
