BAC Information

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BAC

Clone NameMSMg01-531O04
Chromosome3 (Build37)
Map Location 37,332,070 - 37,452,407
singlet/doubletdoublet
Overlap geneSpata5
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O04.T7 (MSMg01no531_o04.b1)MSMg01-531O04.TJ (MSMg01no531_o04.g1)
ACCAG600177AG600178
length744750
length of high quality
(start - end)		652 (50 - 701)666 (85 - 750)
definitionCHROMAT_FILE: MSMg01no531_o04.b1 PHD_FILE: MSMg01no531_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:40 2005CHROMAT_FILE: MSMg01no531_o04.g1 PHD_FILE: MSMg01no531_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,451,760 - 37,452,407)(37,332,070 - 37,332,735)
sequence
CGTGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACGTATTCTCTGTCCTATATACATAGCACCCTTCACCAT
CTACCCTGGCCCAATTACAATTAGTACACTGGTTATATCTGTGGCTATAT
TACTATCCTCCCAGACCCATAGTTTACATCAGGATTCTCTACTCTTTTAC
ATATCATTAGCTTCACTATTTCTATTAGTCACACTTTTTGGCCCTGTTTA
AAATACCTAAGAGAAATAACTTATTTTGTGGCTAAGTTTTGGAAGGCTCA
GTCAGTGGTTGGCTGGCTAGTATGAGGCAGAATATCCTTGTGCTAAGGGT
ATGTGGCCATGGTGGCCAGGAAGCACAGAGACAGGAATGGACTAGGAACA
GGGCAACTTCCAGTGACCTATTTCTTCCAACCAAGTTCAGCTTCCTATCC
CCTCCTACCTCAGGCTAAAACCTATCAATAGATTAAAATCACAACCAATT
CTTACTGATTGGATCCAATGCCTGAGTATGCTTGGAGGGGTAAGGGCATT
TCATATTCCATCTGTATCAGTGTCCTCAAATACTCTCTTTTCTCTGGCCT
CTTACTCTTTTACTTTTGTCTTTTCCAGAATGCCATGTGTTTGGAATTAT
ACAGCAGGCCATTTTCAGACTGGTTTCTTTTACTTAGTAACATGCCCATC
AGATTCTTCTGTGTATTTTCTTTATACTTTGCATAGATAATGTG

CCTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTAGAGGGTTATTA
CTCTATGGTCCTCCAGGTACCGGAAAGACAATGATTGCTAGGGCTGTTGC
TAATGAAGTTGGAGCTTATGTTTCTGTAATTAATGGTCCTGAAATTATAA
GCAAGTAGGTATATGACTCAGTAAGTAAAGTTAACATTACTAAGTTTATA
TAGTTCAGATGTGGCTCCTTAAAACAGTTGTGTTGTATTCCAACAAGATA
TTTCATGCATTAAACTATTTTGGAGTATTTTAAATTTGCCCTTTTTTCCT
GAGGGTGATTTTACCCACGTGCTTAGCCAGACCTCATACTTTAAATGTTT
TTGTGATTATACATGTTCTTCTAAATTTACTTTATAAATTCTATACACAC
AGAATTTGAAACTAATTTTGAAAGTAATTTTAAGTATTTTAGAAATGCTT
GAAAATTCAGACTCTCTTTTATAGAAAAAATCTATAAACAATAAGAGTAC
ATTTTTTTTTCCTTCCTCATTATAGATTCTACGGTGAGACTGAAGCAAGG
TTACGCCAGATATTTGCTGAAGCTACTCTACGGTATTGTTAATATTTGAT
GCTTTGGAATCTCTGAGACCCTATTTAAGTAAAATAGTAGCACTTTATGC
AGAGATAAGTAACACAGATAGTATATTGATGGCCTTAGAGACTGATGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o04.b1 MSMg01no531_o04.b1 CHROMAT_FILE:
MSMg01no531_o04.b1 PHD_FILE: MSMg01no531_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:40 2005
         (652 letters)



>mm_chr3_37451660_37452711
          Length = 1052

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacgtattctctgtcctatatacatagcacccttcaccatctaccctggccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattctcacgtattctctgtcctatatacatagcacccttcaccatctaccctggccca 689

                                                                       
Query: 65  attacaattagtacactggttatatctgtggctatattactatcctcccagacccatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attacaattagtacactggttatatctgtggctatattactatcctcccagacccatagt 629

                                                                       
Query: 125 ttacatcaggattctctactcttttacatatcattagcttcactatttctattagtcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttacatcaggattctctactcttttacatatcattagcttcactatttctattagtcaca 569

                                                                       
Query: 185 ctttttggccctgtttaaaatacctaagagaaataacttattttgtggctaagttttgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctttttggccctgtttaaaatacctaagagaaataacttattttgtggctaagttttgga 509

                                                                       
Query: 245 aggctcagtcagtggttggctggctagtatgaggcagaatatccttgtgctaagggtatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggctcagtcagtggttggctggctagtatgaggcagaatatccttgtgctaagggtatg 449

                                                                       
Query: 305 tggccatggtggccaggaagcacagagacaggaatggactaggaacagggcaacttccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tggccatggtggccaggaagcacagagacaggaatggactaggaacagggcaacttccag 389

                                                                       
Query: 365 tgacctatttcttccaaccaagttcagcttcctatcccctcctacctcaggctaaaacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgacctatttcttccaaccaagttcagcttcctatcccctcctacctcaggctaaaacct 329

                                                                       
Query: 425 atcaatagattaaaatcacaaccaattcttactgattggatccaatgcctgagtatgctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atcaatagattaaaatcacaaccaattcttactgattggatccaatgcctgagtatgctt 269

                                                                       
Query: 485 ggaggggtaagggcatttcatattccatctgtatcagtgtcctcaaatactctcttttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaggggtaagggcatttcatattccatctgtatcagtgtcctcaaatactctcttttct 209

                                                                       
Query: 545 ctggcctcttactcttttacttttgtcttttccagaatgccatgtgtttggaattataca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctggcctcttactcttttacttttgtcttttccagaatgccatgtgtttggaattataca 149

                                                           
Query: 605 gcaggccattttcagactggtttcttttacttagtaacatgcccatca 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcaggccattttcagactggtttcttttacttagtaacatgcccatca 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_o04.g1 MSMg01no531_o04.g1 CHROMAT_FILE:
MSMg01no531_o04.g1 PHD_FILE: MSMg01no531_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:40 2005
         (666 letters)



>mm_chr3_37331870_37332935
          Length = 1066

 Score = 1288 bits (666), Expect = 0.0
 Identities = 666/666 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctagagggttattactctatggtcctccaggtaccggaaagacaatgattgctagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctagagggttattactctatggtcctccaggtaccggaaagacaatgattgctagggc 260

                                                                       
Query: 61  tgttgctaatgaagttggagcttatgtttctgtaattaatggtcctgaaattataagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgctaatgaagttggagcttatgtttctgtaattaatggtcctgaaattataagcaa 320

                                                                       
Query: 121 gtaggtatatgactcagtaagtaaagttaacattactaagtttatatagttcagatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggtatatgactcagtaagtaaagttaacattactaagtttatatagttcagatgtgg 380

                                                                       
Query: 181 ctccttaaaacagttgtgttgtattccaacaagatatttcatgcattaaactattttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccttaaaacagttgtgttgtattccaacaagatatttcatgcattaaactattttgga 440

                                                                       
Query: 241 gtattttaaatttgcccttttttcctgagggtgattttacccacgtgcttagccagacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattttaaatttgcccttttttcctgagggtgattttacccacgtgcttagccagacct 500

                                                                       
Query: 301 catactttaaatgtttttgtgattatacatgttcttctaaatttactttataaattctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catactttaaatgtttttgtgattatacatgttcttctaaatttactttataaattctat 560

                                                                       
Query: 361 acacacagaatttgaaactaattttgaaagtaattttaagtattttagaaatgcttgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacacagaatttgaaactaattttgaaagtaattttaagtattttagaaatgcttgaaa 620

                                                                       
Query: 421 attcagactctcttttatagaaaaaatctataaacaataagagtacatttttttttcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcagactctcttttatagaaaaaatctataaacaataagagtacatttttttttcctt 680

                                                                       
Query: 481 cctcattatagattctacggtgagactgaagcaaggttacgccagatatttgctgaagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcattatagattctacggtgagactgaagcaaggttacgccagatatttgctgaagct 740

                                                                       
Query: 541 actctacggtattgttaatatttgatgctttggaatctctgagaccctatttaagtaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actctacggtattgttaatatttgatgctttggaatctctgagaccctatttaagtaaaa 800

                                                                       
Query: 601 tagtagcactttatgcagagataagtaacacagatagtatattgatggccttagagactg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtagcactttatgcagagataagtaacacagatagtatattgatggccttagagactg 860

                 
Query: 661 atggga 666
           ||||||
Sbjct: 861 atggga 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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