BAC Information

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BAC

Clone NameMSMg01-531P07
Chromosome3 (Build37)
Map Location 37,172,737 - 37,173,075
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21
Downstream geneCetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531P07.T7 (MSMg01no531_p07.b1)MSMg01-531P07.TJ (MSMg01no531_p07.g1)
ACCAG600230AG600231
length729744
length of high quality
(start - end)
584 (76 - 659)426 (82 - 507)
definitionCHROMAT_FILE: MSMg01no531_p07.b1 PHD_FILE: MSMg01no531_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:45 2005CHROMAT_FILE: MSMg01no531_p07.g1 PHD_FILE: MSMg01no531_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCCTACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTCATCTCTCCATACTTTTAACATGAAGGGGTGTTG
TATTTTGTCTGCACTAAAGCTATTTGGTCCTGGGCTGGTTTTGGTTGGGA
GGTATTTAATGACTTCTAATTCCTTAGGGGATATGGGACTGTTTAGCTAG
TTTACCTGCTCTTGATTTAACTTAGGTACATGTCATCTGTCTAAAACATC
ATATATTTCATCTAGATTTTCCAGATTTGTTGAGTAAGGGCTGTTGAGGT
AAGATTGAATTTTTTTTTTAATGTCTTCAAGTTTCTGTTTTTCTGTCTTC
CATTTCTTTTCTGATTTTGTTAATTTGGATACTGTCTCTGTGTCCTTTAG
TTAGTTTGGCTAAGGGTTTATCTATCTTGTTGATTTTTATCAAAGAACCA
GCTTTTGTTTTTGTTGATTCTCTGTATCTGGTTATCTATGGGGTTAACTG
GCCTAGGTGTCCCTGTCTGGAGCTTGCCTCCTGTGTCCCTTATTTGAAGC
GGATCTCCTGGGAGCTCTGTGGCACTGGCTGCAGTAGATCTCCTGGTAGA
CCTGGAAGGGAAGTGGTGTTCACACCAGGACTCTGATTGTTGTTGTTGTT
GTTATTGTTGTTGTTGTTGCCGCTTTGTTCTTGTTGGTCTGGCTTGCATC
TGTATGATCTTCCACTTCTTTTTCTCTCT
TTTTTCCCGCTTTTAGTGTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCTCAAAACTTACGGG
TACTCATTTGTGTTTTCTTTCTGTGCTGAGGACTGAACGTAAGACCTCAT
GTATGCTGGCTAAGTACTCTACTACTGAGTTGCACTCTGAATCGCTAGAG
AGAGGAATCATTACAATTGCCCTGTGCATACGGTGTATGTGTGTGTGTGT
GTGGGGGGGGACAGCATTCTTGATTCCTTAGGACCAGCTTTCTAATACGA
AGTCTTCCAAGAGTAGAATGGGCCACTTTGTGAGGTGGCGAGTTCTATGA
TGCTGAAACTAGTTGAGCCAACCCACATAGAAGAAAGTCTAAGTGCCTCC
CAAGCTCTCTGGCATTTCTATGTGACCGATCAGCACGTGGGCAGACTGTC
AGGTGGGCTCTCTGTGGTGATGGGGCAGTTCTGTTCTACAGTGTGATGTG
GCAGCATGCCATCCATTGTACAGATGGGAGACTGACTTATGCATTTAACA
TAATGGCAATCAATTTACTCTTAACTAGTTGCAGATGGCTCCTCACGATC
TAGAAATCTGATGTTTTCCAGCAATTGTCATCACTCACTACATCACCTGC
TGTGCTGGACACTATTAAAATTGCTACACCAGGATATATTCCTTGCTTTA
GAGTATATATCCTTTAGAGAGGTATGGGTTTATGTAGAAATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_p07.g1 MSMg01no531_p07.g1 CHROMAT_FILE:
MSMg01no531_p07.g1 PHD_FILE: MSMg01no531_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:45 2005
         (426 letters)



>mm_chr3_37172250_37173075
          Length = 826

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 88  ctactactgagttgcactctgaatcgctagagagaggaatcattacaattgccctgtgca 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ctactactgagttgcactctgaatcgctagagagaggaatcattacaattgccctgtgca 767

                                                                       
Query: 148 tacggtgtatgtgtgtgtgtgtgt-ggggggggacagcattcttgattccttaggaccag 206
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 766 tacggtgtatgtgtgtgtgtgtgtgggggggggacagcattcttgattccttaggaccag 707

                                                                       
Query: 207 ctttctaatacgaagtcttccaagagtagaatgggccactttgtgaggtggcgagttcta 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 706 ctttctaatacgaagtcttccaagagtagaatgggccactttgtgaggtggcgagttata 647

                                                                       
Query: 267 tgatgctgaaactagttgagccaacccacatagaagaaagtctaagtgcctcccaagctc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgatgctgaaactagttgagccaacccacatagaagaaagtctaagtgcctcccaagctc 587

                                                                       
Query: 327 tctggcatttctatgtgaccgatcagcacgtgggcagactgtcaggtgggctctctgtgg 386
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tctggcatttctatgtgactgatcagcacgtgggcagactgtcaggtgggctctctgtgg 527

                                                  
Query: 387 tgatggggcagttctgttctacagtgtgatgtggcagca 425
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 526 tgatggggcagttctgttctacagcgtgatgtggcagca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)