Query= MSMg01no532_c03.b1 MSMg01no532_c03.b1 CHROMAT_FILE:
MSMg01no532_c03.b1 PHD_FILE: MSMg01no532_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:58 2005
(518 letters)
>mm_chr3_51820333_51821247
Length = 915
Score = 924 bits (478), Expect = 0.0
Identities = 504/514 (98%), Gaps = 3/514 (0%)
Strand = Plus / Plus
Query: 5 gaattccctaagtgtttctccccggctatttctagaggacaccatgacatgtctctgttg 64
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctaagtgtccctccccggctatctctagaggacaccatgacatgtctctgttg 264
Query: 65 agggcacacagtctaccccagctaacctgagtattccttgctagtctccttgaatgattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggcacacagtctaccccagctaacctgagtattccttgctagtctccttgaatgattc 324
Query: 125 agaaaagatttaactacgttctgcacctccggatcttaaacaagccagcaatgacaagga 184
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 agaaaagatttaactacattctgcacctcctgatcttaaacaagccagcaatgacaagga 384
Query: 185 cggcgaacaattattaagggataactgtgtacagactccaaggtaaaggcattaaaatgg 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cggtgaacaattattaagggataactgtgtacagactccaaggtaaaggcattaaaatgg 444
Query: 245 aaaaaaaaaaggtgagaaacagccttcggccagcaagaccgttcaacgttagtggctaaa 304
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ---aaaaaaaggtgaggaacagccttcggccagcaagaccgttcaacgttagtggctaaa 501
Query: 305 taacaccctgctaggcttacagggaaagcagcactccgcggagctaaaacacaacccaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taacaccctgctaggcttacagggaaagcagcactccgcggagctaaaacacaacccaac 561
Query: 365 atcaggatgtctcttagaaacatggtggtgtctaatcctgttttcttaagtagaacacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcaggatgtctcttagaaacatggtggtgtctaatcctgttttcttaagtagaacacag 621
Query: 425 catctcatggatgatcgtcattagcatgaacgtcagtaatagacatgcaggcaggggcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catctcatggatgatcgtcattagcatgaacgtcagtaatagacatgcaggcaggggcag 681
Query: 485 ggtctaaaaacaaaagagctctctcaattgtctc 518
||||||||||||||||||||||||||||||||||
Sbjct: 682 ggtctaaaaacaaaagagctctctcaattgtctc 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 915
Length adjustment: 10
Effective length of query: 508
Effective length of database: 905
Effective search space: 459740
Effective search space used: 459740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_c03.g1 MSMg01no532_c03.g1 CHROMAT_FILE:
MSMg01no532_c03.g1 PHD_FILE: MSMg01no532_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:58 2005
(607 letters)
>mm_chr3_51954706_51955712
Length = 1007
Score = 888 bits (459), Expect = 0.0
Identities = 490/507 (96%), Gaps = 13/507 (2%)
Strand = Plus / Minus
Query: 1 tgtctgtacggcttccttcactatgctgtccttcctagtgagagctggctgcaactgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtctgtacggcttccttcactatgctgtccttcctagtgagagctggctgcaactgtga 435
Query: 61 ctttcttcactatgctgtccttcctagtgagggctggctgcaaatgtgactttcttgaat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 ctttcttcactatgctgtccttcctagtgagggctggctgcaactgtgactttcttgaat 375
Query: 121 gcccaagtccgtttccgtgacttggggagattgctagtctcggccagcttccctgtggga 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 gcccaagtccgtttccgtgacttggggagattgctagtcttggccagcttccctgtggga 315
Query: 181 cctaaaactcagggtggttgtgagatcatattgtgtgtttctcctctctccacaatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctaaaactcagggtggttgtgagatcatattgtgtgtttctcctctctccacaatgctt 255
Query: 241 ctctatgctgtggacagctcagtgcctagaaacagttttccatttttatagtgtttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctctatgctgtggacagctcagtgcctagaaacagttttccatttttatagtgtttttat 195
Query: 301 tttatttcatttcattttattttattttattttagttgtttaagattagaggccaaatct 360
| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 t--------ttt-at----ttttattttattttagttgtttaagattagaggccaaatct 148
Query: 361 agtctttttcatgccactagcaagattgctttgaccctttccatagtctaatttttacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agtctttttcatgccactagcaagattgctttgaccctttccatagtctaatttttacag 88
Query: 421 tttacagcctaccatagttacaagtttttcattttaagagaaagctcctataagtaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tttacagcctaccatagttacaagtttttcattttaagagaaagctcctataagtaaatt 28
Query: 481 cttttcagccttcatttgtatgattga 507
|||||||| |||| |||||||||||||
Sbjct: 27 cttttcagtcttcgtttgtatgattga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
