Query= MSMg01no532_d06.b1 MSMg01no532_d06.b1 CHROMAT_FILE:
MSMg01no532_d06.b1 PHD_FILE: MSMg01no532_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:04 2005
(274 letters)
>mm_chr3_145555135_145555808
Length = 674
Score = 507 bits (262), Expect = e-148
Identities = 271/274 (98%)
Strand = Plus / Minus
Query: 1 atatttcacaggagactcagacattgtttgagactgaccttaggaaccatttcctgactg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 474 atatttcacaggagactcagacattgtttgaggctgaccttaggaaccatttcctgactg 415
Query: 61 cgctcccaggcctgggtggaggcagccccctctggctctccccggaccatcagcaatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cgctcccaggcctgggtggaggcagccccctctggctctccccggaccatcagcaatcat 355
Query: 121 tgtacatgctctgcctcttttgaaggaaatgactttctcaagatcatgatgattctaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtacatgctctgcctcttttgaaggaaatgactttctcaagatcatgatgattctaagg 295
Query: 181 gggtagatacaaggcgagtcagaaggaagctcagaaagggggaggtggtggagtggagaa 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 294 gggtagatacaaggcgagtcagaaggaagctcagaaaggcggaggtggtggagtggagaa 235
Query: 241 agacttccctccatactacaggaccagtcatgag 274
|||||||||||||||||||||||| |||||||||
Sbjct: 234 agacttccctccatactacaggactagtcatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no532_d06.g1 MSMg01no532_d06.g1 CHROMAT_FILE:
MSMg01no532_d06.g1 PHD_FILE: MSMg01no532_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:04 2005
(449 letters)
>mm_chr3_145387733_145388578
Length = 846
Score = 818 bits (423), Expect = 0.0
Identities = 442/449 (98%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 catgcactggggatagagcctggtactagaatctggtatttagtgggcctggtatatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 catgcactggggatagagcctggtactagaatctggtatttagtgggcctggtatat--g 258
Query: 61 tctgtccagtggacaagtaagctttatagacaacaacatcctcatgataaagtttccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctgtccagtggacaagtaagctttatagacaacaacatcctcatgataaagtttccata 318
Query: 121 atgaaatccgtttgatttcagctttctcaaggcagggaactcctattaaacaaaagagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgaaatccgtttgatttcagctttctcaaggcagggaactcctattaaacaaaagagct 378
Query: 181 aatgtaaagttgtttgtttgtttggcacgcttagtttcttattttaaaatggataggatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgtaaagttgtttgtttgtttggcacgcttagtttcttattttaaaatggataggatt 438
Query: 241 ctatacatataaaaatgttgtgtgtgaacccgtagcacttacatgaatctttgttctatt 300
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 ctatacatataaaaatgttttgtgtaaacccgtagcacttacatgaatctttgttctatt 498
Query: 301 agagccaccaccagggggaatctatcttccggtcaatagttgtggacagtgaaaaaccgc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 agagccaccaccagggggaatctatcttccggtcaatagttgtggacagtgaaaaaccac 558
Query: 361 ggtgtaggggagcagggcgagagggcacggggcactgagcatcctaacaacttagccacc 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 cgtgtaggggagcagggcgagagggcacggg-cactgagcatcctaacaacttagccacc 617
Query: 421 cactggccatctctatagctctgcagaga 449
|||||||||||||||||||||||||||||
Sbjct: 618 cactggccatctctatagctctgcagaga 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 846
Length adjustment: 10
Effective length of query: 439
Effective length of database: 836
Effective search space: 367004
Effective search space used: 367004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
