BAC Information

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BAC

Clone NameMSMg01-532D17
Chromosome3 (Build37)
Map Location 17,539,644 - 17,540,326
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532D17.T7 (MSMg01no532_d17.b1)MSMg01-532D17.TJ (MSMg01no532_d17.g1)
ACCAG600441AG600442
length747750
length of high quality
(start - end)
683 (65 - 747)665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no532_d17.b1 PHD_FILE: MSMg01no532_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:06 2005CHROMAT_FILE: MSMg01no532_d17.g1 PHD_FILE: MSMg01no532_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATGTATTGTTTTGAAAGGGCAGGTTTTAATATGAG
CTCTGTCTCTTCCACCAATGTTATGATTGACTACAATTCAAAAATACCAG
ATGGCTGACTGTAATCAAACAACAATACAATAGAGAAAGATTAATCCTGA
TTTCTGAGTATGATATTAAGCTTTTGAAAGCCTATTTCTGGTTAAGCTCA
GCTGATTGATTTATGATGCCCTACACATAAAAAATGGATGCTGTGATGCT
TGAGTTATGGGTCTAGATATGTCAGAATTCACTATTATAAGAATCTCGGG
ATATGATCTCAGATCATCCTTGTAATGCATTCATGTCTATGTGCATAACT
GCAAATAATAAGTTTAGCTATATAATGAATTTGGTCTCACAATGCAAGCT
TTCTTGATCCTATTCATATGGCAGTCAGGTGAGACTGCTTTTTACCTCCT
TCATCACATTTCTTGATGTCATATTATCTGTGAGCAATTGGATGACAGAT
ACTGCATTTTCATTTCTGAGCCTCCAGAAACAAGGGCAGTGCATTTGTTC
ATCTGACAAATAAATAAATTGGAATGATAGTATCCAGAAATTATAGCCAT
CCTCAATCCTTTAGGTATTAAGTTCCATTATTAATGATAGATTTAATATA
AATGTTATAAAATGTAAACTTGCTTTCATAGACTCTAAATATTTTAT
NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTATGCCTAGTTAGAGATCA
TCCCTGCTAACTAGTGTTCATGGTTCAGGAAGATATTCTGCATAATACTA
GAAGAGGAAGGTAAACACCTACCCAGCTACAAAACCATCTGATCTACAGT
AGTGGCCTGTCTGCATATTGTGCTGGTGGAATAGTGGCACAACAAGTGTG
GGAGTAACCAATTCCTAACTGTTTGGATTTAGCTCACTTGAACCCGAAGC
ATATCACTGATCAGATGGCTAAGAACATGAGACCAGATGGGCCATACACC
TAGGAGAAAACCATATACTATTGTTATGCTATAGGAGCATAGCAATAAAA
TAACTCCTAATAACATTATGTTATAACCATATTTCAGTGTCTCTATCAAC
CATCATCAGAAAAGCCTCCTTCTGTAGGAAATGAAAACTAATACACACAC
CCACAACTGAACAATGTGCACAGAGTGACAGATCTTAGAACATCCAATCC
TAAATAGAATATCTTCTTCAAAACCCTTCCCCTCAGGTTTCAGAGTACAA
TGTAGAGAAAGGGCAGAACTAAAGTGCATAAAGCCAGAAAGGGTCACAAA
AATTAAAGAGGAAGTTTACACAAATCCTCATCCCTAACATAAATGCTATC
TCAAGTTGAAACTCGTACAAATGAAATACTAGTTTTCTTCAATGGTGTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_d17.b1 MSMg01no532_d17.b1 CHROMAT_FILE:
MSMg01no532_d17.b1 PHD_FILE: MSMg01no532_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:06 2005
         (683 letters)



>mm_chr3_17539444_17540526
          Length = 1083

 Score = 1251 bits (647), Expect = 0.0
 Identities = 674/683 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtattgttttgaaagggcaggttttaatatgagctctgtctcttccaccaatgttat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 aatgtagtgttttgaaagggcaggttttaatatgagctctgtctcttccaccaatgttat 824

                                                                       
Query: 61  gattgactacaattcaaaaataccagatggctgactgtaatcaaacaacaatacaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gattgactacaattcaaaaataccagatggctgactgtaatcaaacaacaatacaataga 764

                                                                       
Query: 121 gaaagattaatcctgatttctgagtatgatattaagcttttgaaagcctatttctggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaaagattaatcctgatttctgagtatgatattaagcttttgaaagcctatttctggtta 704

                                                                       
Query: 181 agctcagctgattgatttatgatgccctacacataaaaaatggatgctgtgatgcttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agctcagctgattgatttatgatgccctacacataaaaaatggatgctgtgatgcttgag 644

                                                                       
Query: 241 ttatgggtctagatatgtcagaattcactattataagaatctcgggatatgatctcagat 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 643 ttatgggtctagatatgtcagaattcactattataagaatctcaggatatgatctcagat 584

                                                                       
Query: 301 catccttgtaatgcattcatgtctatgtgcataactgcaaataataagtttagctatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 catccttgtaatgcattcatgtctatgtgcataactgcaaataataagtttagctatata 524

                                                                       
Query: 361 atgaatttggtctcacaatgcaagctttcttgatcctattcatatggcagtcaggtgaga 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgaatttggcctcacaatgcaagctttcttgatcctattcatatggcagtcaggtgaga 464

                                                                       
Query: 421 ctgctttttacctccttcatcacatttcttgatgtcatattatctgtgagcaattggatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgctttttacctccttcatcacatttcttgatgtcatattatctgtgagcaattggatg 404

                                                                       
Query: 481 acagatactgcattttcatttctgagcctccagaaacaagggcagtgcatttgttcatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 403 acagatactgcattttcatttctgagcctccagaaacaagggcagtgcatttgttcaact 344

                                                                       
Query: 541 gacaaataaataaattggaatgatagtatccagaaattatagccatcctcaatcctttag 600
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 343 gacaaataaataaattggaatgatagtattcagtaattatagccatcctcaattctttag 284

                                                                       
Query: 601 gtattaagttccattattaatgatagatttaatataaatgttataaaatgtaaacttgct 660
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 283 gtattaagttccattattaatgatagatttaatataaatgttataaagtgtaaacttgtt 224

                                  
Query: 661 ttcatagactctaaatattttat 683
           |||||||||||||||||||||||
Sbjct: 223 ttcatagactctaaatattttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)