Query= MSMg01no532_g16.b1 MSMg01no532_g16.b1 CHROMAT_FILE:
MSMg01no532_g16.b1 PHD_FILE: MSMg01no532_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:20 2005
(589 letters)
>mm_chr3_145606183_145607168
Length = 986
Score = 1054 bits (545), Expect = 0.0
Identities = 574/585 (98%), Gaps = 3/585 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagtgtaaagtcttgaggcgacactcattagttcgttaacataaatacgttc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattctacagtggaaagtcttgaggcgacactcattagttcgttaacataaatacgttc 727
Query: 65 atggagatgtctgtcatagtaacgcacaaaagcaaacactccactcaacgacacatctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atggagatgtctgtcatagtaacgcacaaaagcaaacactccactcaacgacacatctca 667
Query: 125 ggagtcacaattctctacttcttcttcttggctgcttctcctggctccactctgcgaatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggagtcacaattctctacttcttcttcttggctgcttctcctggctccactctgcgaatc 607
Query: 185 ttagatgcccgctcatctttgtcatcatcttgaagagagaaagaagagagctttcttagt 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 606 ttagatgcccgctcatctttgtcatcatcttgaagagggaaagaagagagctttcttagt 547
Query: 245 tctctaaaaatcaacacaaaacacacattcagctttatgccgaaacagttactcactgga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctctaaaaatcaacacaaaacacacattcagctttatgccgaaacagttactcactgga 487
Query: 305 cgtttaaaggcatactaataaaaactaaatactaatttttagaacacggatattaaatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgtttaaaggcatactaataaaaactaaatactaatttttagaacacggatattaaatta 427
Query: 365 catataaagtggttttttaattgcagcaatataatatttgcaaactgaccttttagaggc 424
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 catataaaatggttt---aattgtagcaatataatatttgcaaactgaccttttagaggc 370
Query: 425 aagttaataatgttgtcgcataagatattttggtgaaaatcagctttttctgaaacactc 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagttaataatgtcgtcgcataagatattttggtgaaaatcagctttttctgaaacactc 310
Query: 485 actccccaaactctccagcacaaacagtacatccatttagatacagtccatacttcacag 544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 actccgcaaactctccagcacaaacagtacatccatttagatacagtccatacttcacag 250
Query: 545 cacagagcactgctccttctacaaagcatacatcttctagccgtg 589
|| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 catagagcactgctccttctacaaagcatgcatcttctagccgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space: 565104
Effective search space used: 565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_g16.g1 MSMg01no532_g16.g1 CHROMAT_FILE:
MSMg01no532_g16.g1 PHD_FILE: MSMg01no532_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:20 2005
(661 letters)
>mm_chr3_145434979_145436039
Length = 1061
Score = 1108 bits (573), Expect = 0.0
Identities = 628/661 (95%), Gaps = 26/661 (3%)
Strand = Plus / Plus
Query: 1 ctgcctataaactagggaagtctgaatggagacatgaatgtaaaggccgtctgtaaggac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgcctataaactagggaagtctgaatggagacatgaatgtaaagaccgtctgtaaggac 260
Query: 61 tgtgactatgggtattagagcgtggctggctttgaacattaaactcagcatctacatccc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgactatgggtattagagcgtagctggctttgaacattaaactcagcatctacatccc 320
Query: 121 gctgttcccgcacattccaggatgaaccttcagctccatggctctctccagaaactaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgttcccgcacattccaggatgaaccttcagctccatggctctctccagaaactaaga 380
Query: 181 gccagttcagggctgcctgggatgaccccgcactctttgggtgcagttctgagtgtagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagttcagggctgcctgggatgaccccgcactctttgggtgcagttctgagtgtagag 440
Query: 241 tcttcccaggctaagggaccattgagcgaatggaaaaccttcaagttaggagagaggcag 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tcttcccaggctaagggaccattgagcgaatggaaaacgttcaagttaggagagaggcag 500
Query: 301 gagatgaatgaccttccctgctgtgtaccctgttaccggcattcagagctaggaacactc 360
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gagatgaatgaccttccctgctatgtaccctgttagcggcattcagagctaggaacactc 560
Query: 361 caagcacgactgacaggtatggtgctctgtgcgctgtgctgtgctgtgctgtgctgtgct 420
||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct: 561 caagcacgactgacaggtatggtgctctgtg-----tgct---ctgtg---tgctgtgct 609
Query: 421 gtgctgtgctgtgctgtgctgtgctatgcacccctctatctctctcaccagtgcagtaac 480
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 610 gtgctgtgctgtgc---------------acccctctatctctctcaccagtgcagtaac 654
Query: 481 cccaactcactccatttgctcccattatctcctcaaacgagcgaacactcagtatcataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cccaactcactccatttgctcccattatctcctcaaacgagcgaacactcagtatcataa 714
Query: 541 gattgaatagctagttactagttgtttatgctcacccagcttgttgtattataacaaaac 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gattgaatagttagttactagttgtttatgctcacccagcttgttgtattataacaaaac 774
Query: 601 acttgagtctccacgactgacttataaggtggaggtggctcacaattccagtgaatgggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 775 acttgagtctccacgactgacttataaggtggaggtggctcacaattccagtgaacgggt 834
Query: 661 g 661
|
Sbjct: 835 g 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
