Query= MSMg01no532_p01.b1 MSMg01no532_p01.b1 CHROMAT_FILE:
MSMg01no532_p01.b1 PHD_FILE: MSMg01no532_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:01 2005
(620 letters)
>mm_chr3_39234236_39235255
Length = 1020
Score = 797 bits (412), Expect = 0.0
Identities = 528/606 (87%), Gaps = 71/606 (11%)
Strand = Plus / Minus
Query: 5 gaattccaccagagcttctcacaaggcagaggcaggggactactggaacggctggggatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattccaccagagcttctcacaaggcagaggcaggggactactggaacggctggggatt 547
Query: 65 tctttttaactacatgtgcctgtgacaccaagtcagggacatatatttcatcctaaagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctttttaactacatgtgcctgtgacaccaagtcagggacatatatttcatcctaaagta 487
Query: 125 tttgcgagtgttgactggatcaaggattcagaaaagctagaaggcttgcagcagtgaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttgcgagtgttgactggatcaaggattcagaaaagctagaaggcttgcagcagtgaccc 427
Query: 185 cgtgacccaaagctgcttaaagagaggaggaatgcatgggactcgaagccaatttattac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cgtgacccaaagctgcttaaagagaggaggaatgcatgggactcgaagccaatttattac 367
Query: 245 tgtgcttatagtaatgaaattatttacttgaattcaaacgtgtcttcaacatcatacaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtgcttatagtaatgaaattatttacttgaattcaaacgtgtcttcaacatcatacaat 307
Query: 305 gtagtcaaaaaccacatgtcttcagaggatccttgtagttgtagaaagtgggtgtgggat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtagtcaaaaaccacatgtcttcagaggatccttgtagttgtagaaagtgggtgtgggat 247
Query: 365 catgatctatctgcagtcatttgcctactcctggattcttc------------------t 406
||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 catgatctatctgcagtcatttgcctactcctggattcttcttaaaagttaattgttttt 187
Query: 407 a-tttctcta-ctattcta-------tttc--------tc------tact---at-tt-- 437
| ||||| || |||| || |||| || | || || ||
Sbjct: 186 attttctgtatatattttaaaatgattttcttcaaagatcagtgtttcctgaaatgttga 127
Query: 438 -----ctatt--------------act-cctgg----atacctctatttctgaagctgtt 473
| ||| ||| | | | |||||||||||||||||||||||
Sbjct: 126 aatcacaattgccttgtgaaacagactgcgtagaccaatacctctatttctgaagctgtt 67
Query: 474 aacttgtcttgtcactcagtgttaaataaatctgatccctgccactgaatcctggagcca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aacttgtcttgtcactcagtgttaaataaatctgatccctgccactgaatcctggagcca 7
Query: 534 cacccc 539
||||||
Sbjct: 6 cacccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_p01.g1 MSMg01no532_p01.g1 CHROMAT_FILE:
MSMg01no532_p01.g1 PHD_FILE: MSMg01no532_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:01 2005
(603 letters)
>mm_chr3_39018720_39019720
Length = 1001
Score = 1116 bits (577), Expect = 0.0
Identities = 596/603 (98%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 1 atagacagaggtaggtagaagctgacatcaaggcaaaaaaaacataataatggtgtacgt 60
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 201 atagacagaggtaggtagaagctgacaccaaggcaaaaaaa--ataataatggtgtacat 258
Query: 61 agtggccaaagggtttgaaaatattgggtaagctatattatttatttaataatgtcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtggccaaagggtttgaaaatattgggtaagctatattatttatttaataatgtcctgg 318
Query: 121 cagaattatgcaatgttaacaagaacatacttttccatgaagagattattagtattagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagaattatgcaatgttaacaagaacatacttttccatgaagagattattagtattagac 378
Query: 181 cctaaagtgtcttaactgaaatggtttatgcatttatatattaatactgtatataatgcc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctaaagggtcttaactgaaatggtttatgcatttatatattaatactgtatataatgcc 438
Query: 241 taagcatactatatatacatatttctgatatataccatatatttatttatacatctattt 300
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaacatactgtatatacatatttctgatatataccatatatttatttatacatctattt 498
Query: 301 taagaagtgttgtttaagaaccatttgttatttggaataacttacagaactctcagttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taagaagtgttgtttaagaaccatttgttatttggaataacttacagaactctcagttgc 558
Query: 361 agtgtcattctgagaattatagactcaaatatataaattgtatttggaaataattccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtgtcattctgagaattatagactcaaatatataaattgtatttggaaataattccaca 618
Query: 421 gagacatatagtccttggctgctatatctagtagcaatacacgatttcagttttgtccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagacatatagtccttggctgctatatctagtagcaatacacgatttcagttttgtccct 678
Query: 481 attgtgaattaagttttcatgtctctgcattcgagattctgaagcccatgacaacaggac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attgtgaattaagttttcatgtctctgcattcgagattctgaagcccatgacaacaggac 738
Query: 541 ctggctgtcccactccacacacaagggatatttacttatacatgaataaaataaaaatac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctggctgtcccactccacacacaagggatatttacttatacatgaataaaataaaaatac 798
Query: 601 atc 603
|||
Sbjct: 799 atc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1001
Length adjustment: 10
Effective length of query: 593
Effective length of database: 991
Effective search space: 587663
Effective search space used: 587663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
