Query= MSMg01no533_b12.b1 MSMg01no533_b12.b1 CHROMAT_FILE:
MSMg01no533_b12.b1 PHD_FILE: MSMg01no533_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(549 letters)
>mm_chr3_70007880_70008829
Length = 950
Score = 992 bits (513), Expect = 0.0
Identities = 538/547 (98%), Gaps = 3/547 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatgatacccaataatgccattgcgttcagcacttcccatgcataacgaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaattctcatgatacccaataatgccattgcgttcagcacttcccatgcataacgaagtt 499
Query: 65 gaagtcacagaaggtaagtcatttg--caagttagcaaactcagaaagtggatggacaaa 122
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 498 gaagtcacagaagataagtcatttgcccaagttagcaaactcagaaagtggacagacaaa 439
Query: 123 aatcaaggctgtgttactcaaactttggaactgaattcccaatctctctggaacaaaaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatcaaggctgtgttactcaaactttggaactgaattcccaatctctctggaacaaaaga 379
Query: 183 gagatcagacagattctattttgctgttgttattattttaatcttagtttaatcactcac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagatcagacagattctattttgctgttgttattattttaatcttagtttaatcactcac 319
Query: 243 tccatacgtaatttttcttctttagagattagggtttatcttgaaccatgaaaatcattg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccatacgtaatttttcttctttagagattagggtttatcttgaaccatgaaaatcattg 259
Query: 303 atttttttcctcccatttattcttttttttttgcggggggggggggttcataaacatttt 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 258 atttttttcctcccatttattcttttttttttgc-gggggggggggttcataaacgtttt 200
Query: 363 tattagatattttcttcatttacatttcaaatgctatcccaaaagttccctataccctcc 422
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 tattagatattttcttcatttacatttcaaatactatcccaaaagttccctataccctcc 140
Query: 423 ccccctactccccaacccaaccactcccacttcctggccctggcattcccctgtactagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ccccctactccccaacccaaccactcccacttcctggccctggcattcccctgtactagg 80
Query: 483 gcatatgatctttgcaaaaccaagggcctctcctcccattgatggccaactaggccatct 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gcatatgatcttcgcaaaaccaagggcctctcctcccattgatggccaactaggccatct 20
Query: 543 tctgata 549
|||||||
Sbjct: 19 tctgata 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_b12.g1 MSMg01no533_b12.g1 CHROMAT_FILE:
MSMg01no533_b12.g1 PHD_FILE: MSMg01no533_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(392 letters)
>mm_chr3_69823136_69823927
Length = 792
Score = 750 bits (388), Expect = 0.0
Identities = 391/392 (99%)
Strand = Plus / Plus
Query: 1 caactccagccccgaggctgaggtttgctaggaagctcaggtgatatccagtggaacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactccagccccgaggctgaggtttgctaggaagctcaggtgatatccagtggaacttt 260
Query: 61 tagtagttgaatttttaaaatggtaagtagaaattttattgcacatcaggaaagtgtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtagttgaatttttaaaatggtaagtagaaattttattgcacatcaggaaagtgtggt 320
Query: 121 gactgaagaactttctgggtgtcatttttgtagtcaggattagaagtggaagggccgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgaagaactttctgggtgtcatttttgtagtcaggattagaagtggaagggccgtgg 380
Query: 181 gtggagaatggagcacagaattcactttggtcctcagtgaaatatggaagccacactggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggagaatggagcacagaattcactttggtcctcagtgaaatatggaagccacactggc 440
Query: 241 attacccacccattttctccgtcgaacactgtggttcctatttcaaaatctcagatgtct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attacccagccattttctccgtcgaacactgtggttcctatttcaaaatctcagatgtct 500
Query: 301 tcaatacacacgtaatgaatatgctcccagtcttactgcaatgcatgctgccctttgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaatacacacgtaatgaatatgctcccagtcttactgcaatgcatgctgccctttgtgt 560
Query: 361 gctatgcagtatagagaacttaagataaaatc 392
||||||||||||||||||||||||||||||||
Sbjct: 561 gctatgcagtatagagaacttaagataaaatc 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
