Query= MSMg01no533_h10.b1 MSMg01no533_h10.b1 CHROMAT_FILE:
MSMg01no533_h10.b1 PHD_FILE: MSMg01no533_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:40 2005
(665 letters)
>mm_chr3_71933129_71934192
Length = 1064
Score = 1239 bits (641), Expect = 0.0
Identities = 656/661 (99%), Gaps = 1/661 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcactaggctctttgtaaaaggaggggaaaattctttcaccatcttacagaat 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcacaaggctctttgtaaaaggaggggaaaattctttcaccatcttacagaat 264
Query: 65 atatttaggaaaatttaaggctatcatgcaacatatgccagagattacactaggagcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatttaggaaaatttaaggctatcatgcaacatatgccagagattacactaggagcaga 324
Query: 125 atcctggaggacaacacaagacaggaactgtgggagtgaacataagcatgtaatcatgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcctggaggacaacacaagacaggaactgtgggagtgaacataagcatgtaatcatgac 384
Query: 185 aggatttcattctaatattcttgctacatccactctgtttataaaattcaattttaccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggatttcattctaatattcttgctacatccactctgtttataaaattcaattttaccat 444
Query: 245 gagatctgaaaagacagtaaagttattatcgcaggagagacaatgatccctgaaaatagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagatctgaaaagacagtaaagttattatcgcaggagagacaatgatccctgaaaatagt 504
Query: 305 atttttctttagttcattatagcatgtgaaatgtaccttgaattaaagttaaattttgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttttctttagttcattatagcatgtgaaatgtaccttgaattaaagttaaattttgtg 564
Query: 365 tatcactctgtttttgatgcctaggatgaaatccaagctcttacacatacttgctgtgta 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataactctgtttttgatgcctaggatgaaatccaagctcttacacatacttgctgtgta 624
Query: 425 ctccatctttgaattttatctctaatcctagaaagcaaattcataatgtctatctcacct 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 ctccatctttgaattttatctctaatcctagaaagcaaat-cataatgtctatctcacct 683
Query: 485 tttcctttctcctataattctgtcttaaataaaatatttaattatattggagaatgatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 684 tttcctttctcctataattctgtcttaaataaaatatttaattatattggacaatgatat 743
Query: 545 agttcctttttttttaacttgggagcaaatccccttttctgtaaaagtggcatttattta 604
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agttcttttttttttaacttgggagcaaatccccttttctgtaaaagtggcatttattta 803
Query: 605 aatttgaataattcattttatcttcaggggtactattaaattatgactttctacctttta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aatttgaataattcattttatcttcaggggtactattaaattatgactttctacctttta 863
Query: 665 a 665
|
Sbjct: 864 a 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_h10.g1 MSMg01no533_h10.g1 CHROMAT_FILE:
MSMg01no533_h10.g1 PHD_FILE: MSMg01no533_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:40 2005
(576 letters)
>mm_chr3_72106018_72106993
Length = 976
Score = 578 bits (299), Expect = e-169
Identities = 318/331 (96%), Gaps = 11/331 (3%)
Strand = Plus / Minus
Query: 1 ttttgatatttcacaagttttgtgcatgtctttgcaactgctgaaagtccatgggtgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttttgatatttcacaagttttgtgcatgtctttgcaactgctgaaagtccatgggtgtaa 272
Query: 61 gtacactgacatgcccagaaaacagttccttgtagcttttgcctgcctctggttcatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtacactgacatgcccagaaaacagttccttgtagcttttgcctgcctctggttcatgga 212
Query: 121 ctttcttta-----------gatccttaagaggaaggtatgtgatagttgtcccatcaat 169
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctttctttagagtgatctatgatccttaagaggaaggtatgtgatagttgtcccatcaat 152
Query: 170 ggataccttgatgtggataccttgttgtaggtacctggttgtattttcttcatttacatt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggataccttgatgtggataccttgttgtaggtacctggttgtattttcttcatttacatt 92
Query: 230 tcaaatgctatcccaaaagtcccctatacccttctccctccatgctccccaacgcaccca 289
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 91 tcaaatgctatcccaaaagtcccctatactcttctccctccatgctccccaacccaccca 32
Query: 290 ctcctgcttcctggccctggcacttccctgt 320
|||||||||||||||||||||||||||||||
Sbjct: 31 ctcctgcttcctggccctggcacttccctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
