BAC Information

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BAC

Clone NameMSMg01-533M20
Chromosome3 (Build37)
Map Location 92,271,372 - 92,271,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3
Downstream geneLOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533M20.T7 (MSMg01no533_m20.b1)MSMg01-533M20.TJ (MSMg01no533_m20.g1)
ACCAG601639AG601640
length758783
length of high quality
(start - end)		587 (56 - 642)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no533_m20.b1 PHD_FILE: MSMg01no533_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:06 2005CHROMAT_FILE: MSMg01no533_m20.g1 PHD_FILE: MSMg01no533_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGTTAATTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCACAGTCCACCCTTAATAACAATCCTTCTTTTTC
ATGGTTACACCCACTCCAACAAGGATGCACCTTCTAATTTTTGTCAAACA
ATTCTACCAACTGGGAACCAGGCAATCAAATATATGAGCATATGTGGGCA
TTCTCATTCAATCCATCACATTCTACTCTTGCAGCCATATCATAATGCAA
AATGTATTCAAAGGCCCCCATAGCCTTTAATTCTTAAGACTGTTTCAAAG
TCCAAAGTGTCACCTGAGACTCATGGCAATCTCTTAACTATAATCCCTGT
AAAAGCAAAAACAAAAAGCAAATAACATGCTTTCAATATTAAAAGGTACA
GTATATAAGTTACCATTCCAAAAGGGAGGAAATATTGTACTAAGGCAGGA
AAGAAACCTAGCAGGACAAACTCCAATTTTGTATCGTTATGTCTGATGTC
AGAGCATTCTTCATATCTCCTACTCCTCCGAGTTTTGTTGACATAAAACA
ATTCTCTCTTTTGAGATGGCTCCACACCTTATTAGCAGGTGTCCTTGGTA
GATATCTAATAGCTCTAGTATCACCAGCGTCTTGGAGTATCCTACAGAGT
CCTGGCTTCAGTTTTACAGCTTAAAGCTCTGGGCCTCCATTGGGGAACTC
CTTTATCACATTCTTGGCCTTAATGGTTTTTCTTAACCCCAAATGACAAT
TCTACAAC

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGGGGATGGGCAATGGATTAA
AACAGGAAGAAAAAAATATTTTTTTCTGTTTCTGGGACCAGAAAGTTGTG
CTTTTTGGCAAGGCCCCTCACCTTTAACTCAGACTAATCCTACAGAGTCT
CTTGAGAATTGAAGTGAAATAGGGGAGGAGACAGCTTTTCTGGTTCTTCC
AGAACACACAGAGGATGCCAAATTAGTGAATCATATTACTTCCTCTTGCT
TAGAGGATCTGGGCCAAGGGAACCAGTTAAAGGGTAAACTCTCCCCTCAG
ACAGTGGGCAGTGTTATCTGAATTTATGTATAGGTCTGTAAAAGTAGAGA
GTCAGTAAGAAATGAAGGAAGAAGAGAAGAAAGGAGTGGGAGAAAGGGAG
AGAAAGGAAGAAAAAGGAGGAGGGAGAGGAAGAAGAGAGGGAGGATATCA
GATTAATGAGAACCATAGGGTTGCATCGGGAAATTAGTCATTCTTTGACA
TAGATTATGGTATGAGGTGGGAANGAGGGTGAAGGTTCATAGGGAGCGCA
TGCATTCATTGCCTGCCTTTTGCATTTACTTCTGTCTCTGTTAGGATTCG
ATCAGTTTTTTCTTTCTAGGGTGAAATCAGAGCCACACCATACCTAAGCT
CAAGTTTCTGGATCATATTAGCTCTGCCTTAGAGTCAGGCCCAGGTTTCT
TCCTCATTAAACACCTCTTATGAACCCTAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_m20.g1 MSMg01no533_m20.g1 CHROMAT_FILE:
MSMg01no533_m20.g1 PHD_FILE: MSMg01no533_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:06 2005
         (586 letters)



>mm_chr3_92271174_92272158
          Length = 985

 Score = 1038 bits (537), Expect = 0.0
 Identities = 576/589 (97%), Gaps = 5/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggggatgggcaatggattaaaacaggaagaaaaaaa-tattttttt-ctgtttctg 58
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 199 tggtggggatgggcaatggattaaaacaggaagaaaaaaaatattttttttctgtttctg 258

                                                                       
Query: 59  ggaccagaaagttgtgctttttggcaaggcccctcacctttaactcagactaatcctaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggaccagaaagttgtgctttttggcaaggcccctcacctttaactcagactaatcctaca 318

                                                                       
Query: 119 gagtctcttgagaattgaagtgaaataggggaggagacagcttttctggttcttccagaa 178
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 319 gagtctcttgagatttgaagtgaaatatgggaggagacagcttttctggttcttccagaa 378

                                                                       
Query: 179 cacacagaggatgccaaattagtgaatcatattacttcctcttgcttagaggatctgggc 238
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 cacacagaggatgccaaattagtgaatcatattaattcctcttgcttagaggatctgggc 438

                                                                       
Query: 239 caagggaa-ccagttaaagggtaaactctcccctcagacagtgggcagtgttatctgaat 297
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caagg-aagccagttaaagggtaaactctcccctcagacagtgggcagtgttatctgaat 497

                                                                       
Query: 298 ttatgtataggtctgtaaaagtagagagtcagtaagaaatgaaggaagaagagaagaaag 357
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 498 ttatgcataggtctgtaaaagtagagagtcagtaagaaatgaaggaaggagagaagaaag 557

                                                                       
Query: 358 gagtgggagaaagggagagaaaggaagaaaaaggaggagggagaggaagaagagagggag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagtgggagaaagggagagaaaggaagaaaaaggaggagggagaggaagaagagagggag 617

                                                                       
Query: 418 gatatcagattaatgagaaccatagggttgcatcgggaaattagtcattctttgacatag 477
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 gatgtcagattaatgagaaccatagggttgcatcgggaaattagtcattctttgacacag 677

                                                                       
Query: 478 attatggtatgaggtgggaangagggtgaaggttcatagggagcgcatgcattcattgcc 537
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 678 attatggtatgaggtgggaa-gagggtgaaggttcatagggagcgcatgcatccattgcc 736

                                                            
Query: 538 tgccttttgcatttacttctgtctctgttaggattcgatcagttttttc 586
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgccttttgcatttacttctgtctctgttaggattcgatcagttttttc 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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