BAC Information

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BAC

Clone NameMSMg01-533N06
Chromosome3 (Build37)
Map Location 151,232,679 - 151,233,256
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1
Downstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533N06.T7 (MSMg01no533_n06.b1)MSMg01-533N06.TJ (MSMg01no533_n06.g1)
ACCAG601658AG601659
length719757
length of high quality
(start - end)
478 (49 - 526)578 (81 - 658)
definitionCHROMAT_FILE: MSMg01no533_n06.b1 PHD_FILE: MSMg01no533_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:08 2005CHROMAT_FILE: MSMg01no533_n06.g1 PHD_FILE: MSMg01no533_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCTTTTTCCTTTTTTTTGTTGCCGCTAAATTACTCTCTATTTCTAGA
GGATCCGCGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATG
CTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTG
GGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCT
GTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGT
TAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTATTGATTTTGT
TACCCTCTATCAGTAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAG
TGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTA
CAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAA
CAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTT
GTCTGGAGTCGATGATGTCGCATCCTCATAATCTCTGTGGCTCTTGCCGG
GAAGGTGGTTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCT
GCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACG
GTCACCCGTGCAGCCTGCCCTCCGCGGAGTCTCGGAGCCAAGAAAGTTTC
CGCCGGCGCCTGTGCCACN
TTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGGACATGCAGGGCCTTG
GGTGGGATCTCTAACACCACACAGCCAGAGCATATTTTGACTAGGACTTT
AATTTTCCTTCTAAAGAAGAAGAAATTCTCCAGGCAGTGGGCTAACGTTC
GATCCCAAGACCACATTTGTAAAATCCCTCTCACGGCCTTCATCTCCATC
TATAGCTGCTCTGTGGACCACCCTTAGTTTTGTTTGTTCCCTAGAGGAAA
TGACTAGGAATCATTTATTTGATCTGACTTTACCTTGTAATTCTTTTTTC
CCCTATTCTTGAAGGCAAGCATGCAGTTTAACTTGTATTTACTGATAAAT
CTGGATCATTTGCATATCAAGAATAATTTAATCACCAGGTATGGATTCAC
CAGGTATGTAGTATAAAGCAAGAAGAGACAATTACTTCAAATCAACTCTT
AGTAAGCTAATGCTTACCAGATATGTAGGAAATAATGAATCCCAAGCGAA
TGACAAAGAGCAGGGGACCATAGAAGAACATCATGACACGAGAACCAGGA
AGGCACAGTCAAAAGGACAGCATCCTGCTCTATTCTCATCTAAATCACTG
CTGAACTGTTGGAAGGATTTAGTAAGACAAGGGACATTTACAGTTTTCCA
GTGTATTGTTTCACAGAAAGATGAGGTCAGGTTCTGACAGGAGCTTATTA
ATGAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_n06.g1 MSMg01no533_n06.g1 CHROMAT_FILE:
MSMg01no533_n06.g1 PHD_FILE: MSMg01no533_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:08 2005
         (578 letters)



>mm_chr3_151232479_151233456
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggacatgcagggccttgggtgggatctctaacaccacacagccagagcatattttga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgggacaggcagggccttgggtgggatctctaacaccacacagccagagcatattttga 260

                                                                       
Query: 61  ctaggactttaattttccttctaaagaagaagaaattctccaggcagtgggctaacgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctaggactttaattttccttctaaagaagaagaaattctccaggcagtgggctaatgttc 320

                                                                       
Query: 121 gatcccaagaccacatttgtaaaatccctctcacggccttcatctccatctatagctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcccaagaccacatttgtaaaatccctctcacggccttcatctccatctatagctgct 380

                                                                       
Query: 181 ctgtggaccacccttagttttgtttgttccctagaggaaatgactaggaatcatttattt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtggaccacccttagttttctttgttccctagaggaaatgactaggaatcatttattt 440

                                                                       
Query: 241 gatctgactttaccttgtaattcttttttcccctattcttgaaggcaagcatgcagttta 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gatctgactttaccttgtaattctttttttccctattcttgaaggcaagcatgcagttta 500

                                                                       
Query: 301 acttgtatttactgataaatctggatcatttgcatatcaagaataatttaatcaccaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgtatttactgataaatctggatcatttgcatatcaagaataatttaatcaccaggt 560

                                                                       
Query: 361 atggattcaccaggtatgtagtataaagcaagaagagacaattacttcaaatcaactctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggattcaccaggtatgtagtataaagcaagaagagacaattacttcaaatcaactctt 620

                                                                       
Query: 421 agtaagctaatgcttaccagatatgtaggaaataatgaatcccaagcgaatgacaaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaagctaatgcttaccagatatgtaggaaataatgaatcccaagcgaatgacaaagag 680

                                                                       
Query: 481 caggggaccatagaagaacatcatgacacgagaaccaggaaggcacagtcaaaaggacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggggaccatagaagaacatcatgacacgagaaccaggaaggcacagtcaaaaggacag 740

                                                 
Query: 541 catcctgctctattctcatctaaatcactgctgaactg 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catcctgctctattctcatctaaatcactgctgaactg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)