BAC Information

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BAC

Clone NameMSMg01-533O06
Chromosome3 (Build37)
Map Location 81,706,374 - 81,706,555
singlet/doubletsinglet
Overlap genenone
Upstream geneGlrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O06.T7 (MSMg01no533_o06.b1)MSMg01-533O06.TJ (MSMg01no533_o06.g1)
ACCAG601706AG601707
length746727
length of high quality
(start - end)
182 (157 - 338)574 (83 - 656)
definitionCHROMAT_FILE: MSMg01no533_o06.b1 PHD_FILE: MSMg01no533_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:12 2005CHROMAT_FILE: MSMg01no533_o06.g1 PHD_FILE: MSMg01no533_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTTTTTCCACACTTTTTGTCGCTCTACGACTCATTACTTCGAGAG
GATTCGCGGAATTCTTCCATTTGCTTTATTTGATCTATATGAATGTTTTA
CCTACAACTATATCTTCCTTCATGTCTGGTAGGCACAAAGATGAGAAGGG
GATGGTATGTTCCCTTCCATTTCACTTTGTACTAACTAACACTGGCAGAA
CAGATTTTGAAACATCATACAGAACTATTCAATATATGGAATAAGTATGT
ATAAATACAGACAAACTAGTTTTTGAAGAGGAAAAGGACCAATAGGGAGC
CTGAATCTCAAGTGCTCTAAAACACCCAAGATCACAGGATCATAGGATCA
CAGATGAAGCTCTAGTCTCAGAATATCATACAAACCCACGGAGCACTGGA
GCTCTGACAAACTCAAGATCTCAGCTAAGGCCACAACATCTTTCCCAACA
ATCTGCCTAATTGGGACCTCTTCAGGAATCAGGGAAACACAAAATCCCAC
CCAGCTATTAGCATGAGTTCTTTCCATCTTGCACCAGGGCTGTAGTACAC
CCTGGACTCTGGTCCCCCATTCTTTCCTGTATTATTTATATTTTTTCTTT
CCCCCTTTTTAACTCCCGATACTGCTTTGTACCTCCTTGAATTTGATCCA
AACCCCGCATTTCGCAACCTTATTTAAACCTTCTTTGTTTTTACATCACA
TGCCCGCACACCATTTTCCCTTTTTTTTCGCCCCTTCAGCCTCCCT
NTTTTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGCTGAGTTCTGTAC
CTCAAGATCAGGTTGCAGTCTGGACATGGGCATTGTAAGGACCAATGAGC
TACAAAGAATGCTCCCCAGTAATCTCTGATTGGGTAAGAAATAGGCTAGA
GCCTGTGACTGGGCATGAGGAAGAGGAAGGTGGGACTTGAGATTGAGTGG
GGGACAGAATCTCAGCTTGGAGCCATGAGGAGAAGGGAAAAGGGAAGGGA
AGGAGGAAGTGGCAGTGAGGCAGGATAGACCATGAGCATGTGACCAATAG
AAAATTTCCCCGAGGATATACATGGAGCAGAGCCAACAGAGCAAGACTCA
CTTGGCAAGTAACATAGGGCATATAGCTGGGATATAGGATAGAGTAGCTC
ACACTCTGCCCAGTTTAGGCTTACAGCTCGTTAATAAAAACACTGGATTT
CTGTGTGTGGAGGCTTGAGTATGCCCAGCCGATAGAGTGGCCCTATTTGG
AGGTGCAGCCTTGTTGTAGTTGATGTGCCACTGTGGGCTTGGGCTTTAAA
ACCCTCAATCTAGCTGCCTGGAAGCCAATCTTCTCCAAGCTGCCCTCAGA
TGAAGAGATAGAATTCTCAGCTCATAGTTCGCCATCTATGCCTGGACACT
GCCATGCTCCCACCTTTATGATAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o06.b1 MSMg01no533_o06.b1 CHROMAT_FILE:
MSMg01no533_o06.b1 PHD_FILE: MSMg01no533_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:12 2005
         (182 letters)



>mm_chr3_81706174_81706755
          Length = 582

 Score =  321 bits (166), Expect = 1e-92
 Identities = 178/182 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttcccttccatttcactttgtactaactaacactggcagaacagattttgaaacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttcccttccatttcactttgtactaactaacactggcagaacagattttgaaacatc 260

                                                                       
Query: 61  atacagaactattcaatatatggaataagtatgtataaatacagacaaactagtttttga 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 261 atacagaactatttaatatatggaataagtatgtataaatacagacaaactagttcgtga 320

                                                                       
Query: 121 agaggaaaaggaccaatagggagcctgaatctcaagtgctctaaaacacccaagatcaca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggaaaaggaccaagagggagcctgaatctcaagtgctctaaaacacccaagatcaca 380

             
Query: 181 gg 182
           ||
Sbjct: 381 gg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)