Query= MSMg01no534_b18.b1 MSMg01no534_b18.b1 CHROMAT_FILE:
MSMg01no534_b18.b1 PHD_FILE: MSMg01no534_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:29 2005
(625 letters)
>mm_chr3_137906262_137907286
Length = 1025
Score = 890 bits (460), Expect = 0.0
Identities = 475/480 (98%)
Strand = Plus / Minus
Query: 146 gaccagtgggaatgggggcttaccagatctgggctagcgagcgagtgtgggtctcttgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gaccagtgggaatgggggcttaccagatctgggctagcgagcgagtgtgggtctcttgtg 966
Query: 206 gtggctgaggagggatgcagacctgcagagtttctagatccgagtcacggggcaccaatg 265
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 965 gtggctgaggagggatgcagacctgcagagtttctagatccgagtcacagggcaccaatg 906
Query: 266 ttgtgattataaaaagataaagagtaggggaatatatgttctctgggggtgtggtgaggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttgtgattataaaaagataaagagtaggggaatatatgttctctgggggtgtggtgaggt 846
Query: 326 ctggggtgagtgtcttggcgtagcactgagcagaagcaatcaatggtcagcttctctctc 385
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 845 ctggggtgagtgtctcggcgtagcactgagcagaagcaatcagtggtcagcttctctctc 786
Query: 386 atagatgctaccatgaagcacaagtggttaggagtcaaaggctcagaaggccacagcaaa 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 785 atagatgctaccatgaagcacaagtggttaggagtcaaaggctcagaaggccacagcaga 726
Query: 446 aggaagcccccaccctgatggagagcagtcactgtcactgtcctttaagaaatggcagtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aggaagcccccaccctgatggagagcagtcactgtcactgtcctttaagaaatggcagtg 666
Query: 506 cctttgtggctctcaatttctggttgatgtgttagaatggtgggtcgcgtctcaacacac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctttgtggctctcaatttctggttgatgtgttagaatggtgggtcgcgtctcaacacac 606
Query: 566 taggccaaggcagttccacgtggaagaggttttgttggaagggagagacaagaaagagaa 625
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tagaccaaggcagttccacgtggaagaggttttgttggaagggagagacaagaaagagaa 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b18.g1 MSMg01no534_b18.g1 CHROMAT_FILE:
MSMg01no534_b18.g1 PHD_FILE: MSMg01no534_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:29 2005
(622 letters)
>mm_chr3_137779990_137781011
Length = 1022
Score = 1060 bits (548), Expect = 0.0
Identities = 611/650 (94%), Gaps = 30/650 (4%)
Strand = Plus / Plus
Query: 1 tctaactcacttctatttcctctctgaattaggggacttgattctgaaagccagtgatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tctaactcacttctatttcctctctgaattaggggacttgattctgaaagccagtgatcc 232
Query: 61 attccaaattcccgaaatgattaaaatacagctactcaggtcattgcttttctatgattt 120
||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 attccaaatccccgagacgattaaaatacagctactcaggtcattgcttttctatgattt 292
Query: 121 tagcatccttgggataaatctatgattttagcatcccta--------------------- 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tagcatccttgggataaatctatgattttagcatccctaggatgaatctatgattttagt 352
Query: 160 -------ggatgaatctatgattttagcatctttaggatgaatctaaggaatatgttctt 212
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 353 atccttgggatgaatctatgattttagcatctttaggatgaatctaaggaatacgttttt 412
Query: 213 taaaatatgcttgccacaaggcagcaggacagagacacttaacaaccattggatccccca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaaatatgcttgccacaaggcagcaggacagagacacttaacaaccattggatccccca 472
Query: 273 aagttttctgcatattttacagttatccaaggttcc-tttaatagaactgattccaactc 331
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 473 aagttttctgcatattttacagttatccaaggttcccttta-tagaactgattccaactc 531
Query: 332 cataactctgtatttaagcaataaatcatttcatatgtaagtgaaatttgactatctaac 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 532 cataactctgtatttaagcaataaatcatttcatatgtaagtgaaatttgactatccaac 591
Query: 392 ttaagtcaatttaagtcaacgtctctaaaacaatacttaatcttaaaagcagttataatt 451
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaagtcaacttaagtcaacgtctctaaaacaatacttaatcttaaaagcagttataatt 651
Query: 452 ttctgtggaatttcagtatgcaaaaatgcttagaaatgatttgatatacctgttgacaaa 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttctgtggaatttcagtatgcaaaaatgcttagaaatgatttgatatacctgttgacaaa 711
Query: 512 taagatgttggttgacttatttgttgacctgctcatttaatttgtagtactggggcttga 571
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 712 taagatgttggttgacttatttattgacctgctcatttaatttgtagtactggggcttga 771
Query: 572 actgggcctcgtacttgctcaacaggctctcaactactgacacacatctc 621
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 actgggccttgtacttgctcaacaggctctcaactactgacacacatctc 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
