Query= MSMg01no534_f19.b1 MSMg01no534_f19.b1 CHROMAT_FILE:
MSMg01no534_f19.b1 PHD_FILE: MSMg01no534_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:51 2005
(612 letters)
>mm_chr3_139006374_139007385
Length = 1012
Score = 690 bits (357), Expect = 0.0
Identities = 421/443 (95%), Gaps = 5/443 (1%)
Strand = Plus / Plus
Query: 5 gaattcattaaaattcctttatgtacatgtatatttagaacacttcttcagtagtagtgt 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaagttcctttatgtacatgtatatttagaacacttcttcagtagtagtgt 264
Query: 65 tccttatggctttttgaaaagcctccgcctgttatttatccttccccataatccctcctc 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tccttatggctttttgaaaagcctccacctgttatttatccttccccataatccctcctc 324
Query: 125 tatcctg-cctctcacctgtgccccttcagtcttcctgttctaatttctcctttatccct 183
|||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tatc-tggcctctcacctgtgcccctttagtcttcctgttctaatttctcctttatccct 383
Query: 184 ttataacattgtgttcaatagccccccgtccccatgatcccttactagctaacaaacttt 243
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 384 ttataacattgtgttcaatagccctccatccccatgatctcttactagctaacaaacttt 443
Query: 244 tctgaatattctaaatgagacacacatatctaaaacataaagctaaccttgatatataag 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 tctgaatattctaaatgagacacacatatctaaaacataaagctaacattgatatataag 503
Query: 304 aaaacatgcagctgggcatagtggtgcctgcctttagtcccagcactcgggaggcggagg 363
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||
Sbjct: 504 aaaacatgcagctgggcatagtggtgcctgcctttaatctcagcacttgggaggcagagg 563
Query: 364 caggcggactctgtaagttcaaagtgagcctggtctacagagtgagttttag-acatcag 422
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct: 564 caggcagactctgtaagttcaaagtcagcctggtctacagagtgagttttaggacattgg 623
Query: 423 gcgctacagaaaaa--gacccta 443
| |||||| ||||| |||||||
Sbjct: 624 gtgctacataaaaaaagacccta 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_f19.g1 MSMg01no534_f19.g1 CHROMAT_FILE:
MSMg01no534_f19.g1 PHD_FILE: MSMg01no534_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:51 2005
(565 letters)
>mm_chr3_139240501_139241465
Length = 965
Score = 1019 bits (527), Expect = 0.0
Identities = 530/531 (99%)
Strand = Plus / Minus
Query: 1 tctccggattaatattgttactgttaacttctttcagttttcactaaattagaagcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tctccggattaatattgttactgttaacttctttcagttttcactaaattagaagcaatg 472
Query: 61 gcctttaattcttttctagctcaagtttgaggtataattgcatatttagtactctattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcctttaattcttttctagctcaagtttgaggtataattgcatatttagtactctattat 412
Query: 121 cagttaaagcataataagcaatctgaatctcttatttatgaaagtaagctaactcttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cagttaaagcataataagcaatctgaatctcttatttatgaaagtaagctaactcttctg 352
Query: 181 gtcatctgaaaagatgaaagaggttgagaactgaatttctttgtgctgttcatcttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtcatctgaaaagatgaaagaggttgagaactgaatttctttgtgctgttcatcttttaa 292
Query: 241 gttagctctcagtagaccttgccgattgaatggggaaaactcaggcatcctactatgacc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attagctctcagtagaccttgccgattgaatggggaaaactcaggcatcctactatgacc 232
Query: 301 ttttgcccttacttactgactagctgattgattgatacaaggtgttaccatttagcccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttttgcccttacttactgactagctgattgattgatacaaggtgttaccatttagcccag 172
Query: 361 gttgcccatgaacttgtaatgcctttccctcagcttcccgagaaagcagaattataagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gttgcccatgaacttgtaatgcctttccctcagcttcccgagaaagcagaattataagca 112
Query: 421 gataccactcccctgggctctcacttattttaaacatcaatattactaatgactatgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gataccactcccctgggctctcacttattttaaacatcaatattactaatgactatgatt 52
Query: 481 agctctcgtgcagtaaattagctggaggtgacatttaaccaagtgggttga 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 agctctcgtgcagtaaattagctggaggtgacatttaaccaagtgggttga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
