TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGAACATTTAACAATTATTGAGTTATATCTGAGTTCACTCTCTTTAGT
GTAGTTCACCTCAGTTCCATGTTGATATTCTGTATGTTTCACCTAATTAA
TTTACTGTCTTGAAGCAACCCTCTGTGAAATATAGCTTTTGCAACATAAA
TCTGTTGCTTTTATTCCTTATTTCAATCTCATTAGTATCTTGTTACCTAA
ATTAGAATAAAATGTAATTTCTTTGGATGTCTACTAGACATTTATAATTT
AGGCTTCACTGTACTCTTGCTTTATTTTGTGGTATCTACTTTTACACACA
CACACACACACACACACACACACACACACAAACAAACACACATTTGAAAT
CAACTGCTATTTTTCCCTCTTTGTCACTGGCAGACCCTTGTTACTATAGC
TAGAAAGTGTCTTAACCAGATCCCCAAATCACCACTGACACTCTCAAATC
AACTTGTATCACTTCTGTGGAGGCTCACAGACATCACCTTTGCCTCTATT
GTGAGCACAGAGTTTATAGACTCAAGTTTGGTATAGTTATCCACCAGCAG
CCAACATTTGAATATTTTAAGATAATTTTTGTGATAAAACATGTATACAA
AATAAAGTGGTTATCTGTCCATGACTACTCTTTTGTTGAGAGACACATGA
AGAAAATTCACCTCTGTTTCTACAGGTCTTTCGTG

CCCCCCCACACCTCCCTTTTCCCCCCTTCTCCCTTTTCCCCACTCCCCCT
ATTTCCCATCTTCCACCTTTCCCTCAACCTTCCATTTCTCCCATCTTTAT
TTTCCTCCCCTACTTCTTCTAATCTTCCTTTCTACCTTTTCCCCCCTTTC
ACCTTCCCCACTCCCCTTCTATACTCCTCTTCTTTTTTTCTCCCCAATAT
ATATTACCACATTCCCTCTTCATTTAATATACTTTTTTCTCCNNNNTTTN
NNNGCATATGTAGCTGCGGCGTGGTCCGGAGGGACNTAGAGATCGAGGAT
ACTTATACCTAATCCGGNTAACTGAT

Query= MSMg01no534_i08.b1 MSMg01no534_i08.b1 CHROMAT_FILE:
MSMg01no534_i08.b1 PHD_FILE: MSMg01no534_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:04 2005
         (643 letters)



>mm_chr3_44124901_44125944
          Length = 1044

 Score = 1075 bits (556), Expect = 0.0
 Identities = 630/682 (92%), Gaps = 43/682 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaacatttaacaattattgagttatatctgagttcactctctttagtgtagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaattcaagaacatttaacaattattgagttatatctgagttcactctctttagtgtagt 222

                                                                       
Query: 65  tcacctcagttccatgttgatattctgtatgtttcacctaattaatttactgtcttgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcacctcagttccatgttgatattctgtatgtttcacctaattaatttactgtcttgaag 282

                                                                       
Query: 125 caaccctctgtgaaatatagcttttgcaacataaatctgttgcttttattccttatttca 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catccctctgtgaaatatagcttttgcaacataaatctgttgcttttattccttatttca 342

                                                                       
Query: 185 atctcattagtatcttgttacctaaattagaataaaatgtaatttctttggatgtctact 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aactcattagtatcttgttacctaaattagaataaaatgtaatttctttggatgtctact 402

                                                                       
Query: 245 agacatttataatttaggcttcactgtactcttgctttattttgtggtatctacttttac 304
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 403 agacatttataatttaggcttcactgtactcttgcattattttgtggtgtctacttttac 462

                                                                       
Query: 305 acacacaca------------------------------------------cacacacac 322
           |||||||||                                          |||||||||
Sbjct: 463 acacacacatacacacacacatacatacacacacacacacacacacacacacacacacac 522

                                                                       
Query: 323 acacacacacacacacaaacaaacacacatttgaaatcaactgctatttttccctctttg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acacacacacacacacaaacaaacacacatttgaaatcaactgctatttttccctctttg 582

                                                                       
Query: 383 tcactggcagacccttgttactatagctagaaagtgtcttaaccagatccccaaatcacc 442
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 583 tcactggcagacccttgttactatagctagaaagtgtcttaaccagatcccctaatcacc 642

                                                                       
Query: 443 actgacactctcaaatcaacttgtatcacttctgtggaggctcacagacatcacctttgc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 actgacactctcaaatcaacttgtatcacttctgtggaggctcacagacatcacctttgc 702

                                                                       
Query: 503 ctctattgtgagcacagagtttatagactcaagtttggtatagttatccaccagcagcca 562
           ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 703 ctctattgtgagcacagagtttatagactcaggtttggtatagctacccaccagcagcca 762

                                                                       
Query: 563 acatttgaatattttaagataatttttgtgataaaacatgtatacaaaataaagtggtta 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acatttgaatattttaagataatttttgtgataaaacatgtatacaaaataaagtggtta 822

                                 
Query: 623 t-ctgtccatgactactctttt 643
           | ||||||||| ||||||||||
Sbjct: 823 ttctgtccatgcctactctttt 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space:   654522
Effective search space used:   654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)